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6YA7

Cdc7-Dbf4 bound to an Mcm2-S40 derived bivalent substrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
B0003676molecular_functionnucleic acid binding
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 601
ChainResidue
ACYS351
ACYS353
ACYS360
ACYS363

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 602
ChainResidue
AASN182
AASP196
AADP604
AHOH722
C7O540

site_idAC3
Number of Residues3
Detailsbinding site for residue ZN A 603
ChainResidue
ACYS449
ALYS451
BMET239

site_idAC4
Number of Residues23
Detailsbinding site for residue ADP A 604
ChainResidue
AGLY67
ASER70
AVAL72
AALA88
ALYS90
AMET118
APRO135
ATYR136
ALEU137
AHIS139
ASER181
AASN182
ALEU184
AASP196
AZN602
AHOH701
AHOH702
AHOH717
AHOH722
AHOH730
AHOH757
AHOH813
C7O540

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS296
BCYS299
BHIS309
BHIS315

site_idAC6
Number of Residues17
Detailsbinding site for Ligand 7O5 C 40 bound to THR C 39
ChainResidue
ATHR68
APHE69
AASP177
ALYS179
AASN182
AASP196
ALEU199
AGLY375
ATHR376
AZN602
AADP604
AHOH702
AHOH722
CTHR39
CSEP41
CHOH108
CHOH109

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues27
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTFSSVYlAtaqlqvgpeek.......IALK
ChainResidueDetails
AILE64-LYS90

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvHrDVKpsNFLY
ChainResidueDetails
AILE173-TYR185

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00600","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"19369195","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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