Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YA6

Minimal construct of Cdc7-Dbf4 bound to XL413

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
B0003676molecular_functionnucleic acid binding
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue 0SX A 601
ChainResidue
ASER70
ALEU184
AVAL195
AASP196
AHOH742
AVAL72
AALA88
ALYS90
AMET134
APRO135
ATYR136
ALEU137
AASN182

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 602
ChainResidue
ACYS351
ACYS353
ACYS360
ACYS363

site_idAC3
Number of Residues8
Detailsbinding site for residue PEG A 603
ChainResidue
AGLU66
AGLY67
ASER70
ASER71
AHIS91
ALEU92
AILE93
AHOH964

site_idAC4
Number of Residues2
Detailsbinding site for residue BO3 A 604
ChainResidue
AGLU85
AHOH803

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS296
BCYS299
BHIS309
BHIS315

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 402
ChainResidue
AASN127
BARG214

site_idAC7
Number of Residues5
Detailsbinding site for residue IMD B 403
ChainResidue
AGLN53
ATYR122
BTHR237
BPHE336
BGLU340

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues27
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTFSSVYlAtaqlqvgpeek.......IALK
ChainResidueDetails
AILE64-LYS90

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvHrDVKpsNFLY
ChainResidueDetails
AILE173-TYR185

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues48
DetailsZinc finger: {"description":"DBF4-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00600","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00600","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon