6Y5X
Structure of apo New Jersey Polyomavirus VP1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005198 | molecular_function | structural molecule activity |
| A | 0019028 | cellular_component | viral capsid |
| B | 0005198 | molecular_function | structural molecule activity |
| B | 0019028 | cellular_component | viral capsid |
| C | 0005198 | molecular_function | structural molecule activity |
| C | 0019028 | cellular_component | viral capsid |
| D | 0005198 | molecular_function | structural molecule activity |
| D | 0019028 | cellular_component | viral capsid |
| E | 0005198 | molecular_function | structural molecule activity |
| E | 0019028 | cellular_component | viral capsid |
| F | 0005198 | molecular_function | structural molecule activity |
| F | 0019028 | cellular_component | viral capsid |
| G | 0005198 | molecular_function | structural molecule activity |
| G | 0019028 | cellular_component | viral capsid |
| H | 0005198 | molecular_function | structural molecule activity |
| H | 0019028 | cellular_component | viral capsid |
| I | 0005198 | molecular_function | structural molecule activity |
| I | 0019028 | cellular_component | viral capsid |
| J | 0005198 | molecular_function | structural molecule activity |
| J | 0019028 | cellular_component | viral capsid |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 401 |
| Chain | Residue |
| A | HIS163 |
| A | LEU258 |
| A | GLN259 |
| A | ARG309 |
| A | HOH511 |
| A | HOH541 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 402 |
| Chain | Residue |
| A | GLN253 |
| B | LEU252 |
| B | GLN253 |
| A | GLU145 |
| A | ARG155 |
| A | GLU158 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 403 |
| Chain | Residue |
| A | GLU53 |
| B | SER237 |
| B | GLU240 |
| B | HOH569 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 404 |
| Chain | Residue |
| A | SER237 |
| A | HOH574 |
| E | GLU53 |
| E | HOH569 |
| E | HOH581 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 401 |
| Chain | Residue |
| B | GLU145 |
| B | ARG155 |
| B | GLU158 |
| B | GLN253 |
| C | LEU252 |
| C | GLN253 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 402 |
| Chain | Residue |
| B | VAL128 |
| B | HIS163 |
| B | LEU258 |
| B | GLN259 |
| B | ARG309 |
| B | HOH506 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue GOL B 403 |
| Chain | Residue |
| B | LEU139 |
| B | GLU141 |
| C | HIS81 |
| C | ALA82 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue MG C 401 |
| Chain | Residue |
| B | GLU53 |
| C | SER237 |
| C | GLU240 |
| C | HOH573 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue GOL C 402 |
| Chain | Residue |
| C | ARG155 |
| C | GLU158 |
| C | GLN253 |
| C | HOH516 |
| D | GLY251 |
| D | LEU252 |
| D | GLN253 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 403 |
| Chain | Residue |
| C | HIS163 |
| C | LEU258 |
| C | GLN259 |
| C | HOH550 |
| C | HOH569 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue MG C 404 |
| Chain | Residue |
| C | GLU53 |
| D | SER237 |
| D | GLU240 |
| D | HOH567 |
| site_id | AD3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL D 401 |
| Chain | Residue |
| D | GLU145 |
| D | ARG155 |
| D | GLU158 |
| D | GLN253 |
| E | GLY251 |
| E | LEU252 |
| E | GLN253 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 402 |
| Chain | Residue |
| D | HIS163 |
| D | LEU258 |
| D | GLN259 |
| D | HOH530 |
| D | HOH596 |
| site_id | AD5 |
| Number of Residues | 7 |
| Details | binding site for residue GOL D 403 |
| Chain | Residue |
| C | LEU139 |
| C | LEU140 |
| C | GLU141 |
| C | HOH531 |
| D | HIS81 |
| D | ALA82 |
| D | TYR85 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 404 |
| Chain | Residue |
| D | LEU90 |
| D | SER91 |
| D | VAL92 |
| D | ALA186 |
| D | LYS192 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue MG D 405 |
| Chain | Residue |
| D | GLU53 |
| D | HOH600 |
| E | SER237 |
| E | GLU240 |
| E | HOH558 |
| E | HOH603 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue GOL E 401 |
| Chain | Residue |
| E | HIS163 |
| E | LEU258 |
| E | GLN259 |
| E | HOH516 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue GOL E 402 |
| Chain | Residue |
| A | LEU252 |
| A | GLN253 |
| E | ARG155 |
| E | GLU158 |
| E | GLN253 |
| site_id | AE1 |
| Number of Residues | 9 |
| Details | binding site for residue GOL E 403 |
| Chain | Residue |
| D | HOH515 |
| E | HIS81 |
| E | ALA82 |
| E | TYR85 |
| E | HOH511 |
| E | HOH515 |
| D | LEU139 |
| D | LEU140 |
| D | GLU141 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue GOL F 401 |
| Chain | Residue |
| F | VAL128 |
| F | HIS163 |
| F | LEU258 |
| F | GLN259 |
| F | HOH547 |
| site_id | AE3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL F 402 |
| Chain | Residue |
| F | ARG155 |
| F | GLU158 |
| F | GLN253 |
| G | GLY251 |
| G | LEU252 |
| G | GLN253 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue MG F 403 |
| Chain | Residue |
| F | GLU53 |
| G | SER237 |
| G | GLU240 |
| G | HOH567 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue MG F 404 |
| Chain | Residue |
| F | SER237 |
| F | GLU240 |
| J | GLU53 |
| J | HOH566 |
| site_id | AE6 |
| Number of Residues | 5 |
| Details | binding site for residue GOL G 401 |
| Chain | Residue |
| G | HIS163 |
| G | LEU258 |
| G | GLN259 |
| G | ARG309 |
| G | HOH555 |
| site_id | AE7 |
| Number of Residues | 7 |
| Details | binding site for residue GOL G 402 |
| Chain | Residue |
| G | GLU240 |
| G | ASN241 |
| G | ARG243 |
| G | ASP270 |
| G | VAL274 |
| G | GLY275 |
| G | PRO276 |
| site_id | AE8 |
| Number of Residues | 5 |
| Details | binding site for residue GOL G 403 |
| Chain | Residue |
| G | ARG155 |
| G | GLU158 |
| G | GLN253 |
| H | LEU252 |
| H | GLN253 |
| site_id | AE9 |
| Number of Residues | 7 |
| Details | binding site for residue GOL G 404 |
| Chain | Residue |
| G | LEU139 |
| G | LEU140 |
| G | GLU141 |
| G | HOH518 |
| H | HIS81 |
| H | ALA82 |
| H | TYR85 |
| site_id | AF1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL H 401 |
| Chain | Residue |
| H | HIS163 |
| H | LEU258 |
| H | GLN259 |
| H | HOH510 |
| H | HOH530 |
| H | HOH531 |
| site_id | AF2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL H 402 |
| Chain | Residue |
| H | ARG155 |
| H | PRO156 |
| H | GLU158 |
| H | GLN253 |
| I | LEU252 |
| I | GLN253 |
| site_id | AF3 |
| Number of Residues | 4 |
| Details | binding site for residue MG H 403 |
| Chain | Residue |
| H | GLU53 |
| I | SER237 |
| I | GLU240 |
| I | HOH542 |
| site_id | AF4 |
| Number of Residues | 6 |
| Details | binding site for residue GOL I 401 |
| Chain | Residue |
| I | HIS163 |
| I | LEU258 |
| I | GLN259 |
| I | HOH510 |
| I | HOH517 |
| I | HOH543 |
| site_id | AF5 |
| Number of Residues | 4 |
| Details | binding site for residue GOL I 402 |
| Chain | Residue |
| I | GLU158 |
| I | GLN253 |
| J | LEU252 |
| J | GLN253 |
| site_id | AF6 |
| Number of Residues | 4 |
| Details | binding site for residue MG I 403 |
| Chain | Residue |
| I | GLU53 |
| I | HOH540 |
| I | HOH574 |
| J | SER237 |
| site_id | AF7 |
| Number of Residues | 4 |
| Details | binding site for residue GOL J 401 |
| Chain | Residue |
| J | HIS163 |
| J | LEU258 |
| J | GLN259 |
| J | HOH508 |
| site_id | AF8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL J 402 |
| Chain | Residue |
| F | GLY251 |
| F | LEU252 |
| F | GLN253 |
| J | ARG155 |
| J | GLU158 |
| J | GLN253 |
