6Y5X
Structure of apo New Jersey Polyomavirus VP1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005198 | molecular_function | structural molecule activity |
A | 0019028 | cellular_component | viral capsid |
B | 0005198 | molecular_function | structural molecule activity |
B | 0019028 | cellular_component | viral capsid |
C | 0005198 | molecular_function | structural molecule activity |
C | 0019028 | cellular_component | viral capsid |
D | 0005198 | molecular_function | structural molecule activity |
D | 0019028 | cellular_component | viral capsid |
E | 0005198 | molecular_function | structural molecule activity |
E | 0019028 | cellular_component | viral capsid |
F | 0005198 | molecular_function | structural molecule activity |
F | 0019028 | cellular_component | viral capsid |
G | 0005198 | molecular_function | structural molecule activity |
G | 0019028 | cellular_component | viral capsid |
H | 0005198 | molecular_function | structural molecule activity |
H | 0019028 | cellular_component | viral capsid |
I | 0005198 | molecular_function | structural molecule activity |
I | 0019028 | cellular_component | viral capsid |
J | 0005198 | molecular_function | structural molecule activity |
J | 0019028 | cellular_component | viral capsid |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue GOL A 401 |
Chain | Residue |
A | HIS163 |
A | LEU258 |
A | GLN259 |
A | ARG309 |
A | HOH511 |
A | HOH541 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue GOL A 402 |
Chain | Residue |
A | GLN253 |
B | LEU252 |
B | GLN253 |
A | GLU145 |
A | ARG155 |
A | GLU158 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue MG A 403 |
Chain | Residue |
A | GLU53 |
B | SER237 |
B | GLU240 |
B | HOH569 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue MG A 404 |
Chain | Residue |
A | SER237 |
A | HOH574 |
E | GLU53 |
E | HOH569 |
E | HOH581 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue GOL B 401 |
Chain | Residue |
B | GLU145 |
B | ARG155 |
B | GLU158 |
B | GLN253 |
C | LEU252 |
C | GLN253 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue GOL B 402 |
Chain | Residue |
B | VAL128 |
B | HIS163 |
B | LEU258 |
B | GLN259 |
B | ARG309 |
B | HOH506 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue GOL B 403 |
Chain | Residue |
B | LEU139 |
B | GLU141 |
C | HIS81 |
C | ALA82 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue MG C 401 |
Chain | Residue |
B | GLU53 |
C | SER237 |
C | GLU240 |
C | HOH573 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue GOL C 402 |
Chain | Residue |
C | ARG155 |
C | GLU158 |
C | GLN253 |
C | HOH516 |
D | GLY251 |
D | LEU252 |
D | GLN253 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue GOL C 403 |
Chain | Residue |
C | HIS163 |
C | LEU258 |
C | GLN259 |
C | HOH550 |
C | HOH569 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue MG C 404 |
Chain | Residue |
C | GLU53 |
D | SER237 |
D | GLU240 |
D | HOH567 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue GOL D 401 |
Chain | Residue |
D | GLU145 |
D | ARG155 |
D | GLU158 |
D | GLN253 |
E | GLY251 |
E | LEU252 |
E | GLN253 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue GOL D 402 |
Chain | Residue |
D | HIS163 |
D | LEU258 |
D | GLN259 |
D | HOH530 |
D | HOH596 |
site_id | AD5 |
Number of Residues | 7 |
Details | binding site for residue GOL D 403 |
Chain | Residue |
C | LEU139 |
C | LEU140 |
C | GLU141 |
C | HOH531 |
D | HIS81 |
D | ALA82 |
D | TYR85 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue GOL D 404 |
Chain | Residue |
D | LEU90 |
D | SER91 |
D | VAL92 |
D | ALA186 |
D | LYS192 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue MG D 405 |
Chain | Residue |
D | GLU53 |
D | HOH600 |
E | SER237 |
E | GLU240 |
E | HOH558 |
E | HOH603 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue GOL E 401 |
Chain | Residue |
E | HIS163 |
E | LEU258 |
E | GLN259 |
E | HOH516 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue GOL E 402 |
Chain | Residue |
A | LEU252 |
A | GLN253 |
E | ARG155 |
E | GLU158 |
E | GLN253 |
site_id | AE1 |
Number of Residues | 9 |
Details | binding site for residue GOL E 403 |
Chain | Residue |
D | HOH515 |
E | HIS81 |
E | ALA82 |
E | TYR85 |
E | HOH511 |
E | HOH515 |
D | LEU139 |
D | LEU140 |
D | GLU141 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue GOL F 401 |
Chain | Residue |
F | VAL128 |
F | HIS163 |
F | LEU258 |
F | GLN259 |
F | HOH547 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue GOL F 402 |
Chain | Residue |
F | ARG155 |
F | GLU158 |
F | GLN253 |
G | GLY251 |
G | LEU252 |
G | GLN253 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue MG F 403 |
Chain | Residue |
F | GLU53 |
G | SER237 |
G | GLU240 |
G | HOH567 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue MG F 404 |
Chain | Residue |
F | SER237 |
F | GLU240 |
J | GLU53 |
J | HOH566 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue GOL G 401 |
Chain | Residue |
G | HIS163 |
G | LEU258 |
G | GLN259 |
G | ARG309 |
G | HOH555 |
site_id | AE7 |
Number of Residues | 7 |
Details | binding site for residue GOL G 402 |
Chain | Residue |
G | GLU240 |
G | ASN241 |
G | ARG243 |
G | ASP270 |
G | VAL274 |
G | GLY275 |
G | PRO276 |
site_id | AE8 |
Number of Residues | 5 |
Details | binding site for residue GOL G 403 |
Chain | Residue |
G | ARG155 |
G | GLU158 |
G | GLN253 |
H | LEU252 |
H | GLN253 |
site_id | AE9 |
Number of Residues | 7 |
Details | binding site for residue GOL G 404 |
Chain | Residue |
G | LEU139 |
G | LEU140 |
G | GLU141 |
G | HOH518 |
H | HIS81 |
H | ALA82 |
H | TYR85 |
site_id | AF1 |
Number of Residues | 6 |
Details | binding site for residue GOL H 401 |
Chain | Residue |
H | HIS163 |
H | LEU258 |
H | GLN259 |
H | HOH510 |
H | HOH530 |
H | HOH531 |
site_id | AF2 |
Number of Residues | 6 |
Details | binding site for residue GOL H 402 |
Chain | Residue |
H | ARG155 |
H | PRO156 |
H | GLU158 |
H | GLN253 |
I | LEU252 |
I | GLN253 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue MG H 403 |
Chain | Residue |
H | GLU53 |
I | SER237 |
I | GLU240 |
I | HOH542 |
site_id | AF4 |
Number of Residues | 6 |
Details | binding site for residue GOL I 401 |
Chain | Residue |
I | HIS163 |
I | LEU258 |
I | GLN259 |
I | HOH510 |
I | HOH517 |
I | HOH543 |
site_id | AF5 |
Number of Residues | 4 |
Details | binding site for residue GOL I 402 |
Chain | Residue |
I | GLU158 |
I | GLN253 |
J | LEU252 |
J | GLN253 |
site_id | AF6 |
Number of Residues | 4 |
Details | binding site for residue MG I 403 |
Chain | Residue |
I | GLU53 |
I | HOH540 |
I | HOH574 |
J | SER237 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue GOL J 401 |
Chain | Residue |
J | HIS163 |
J | LEU258 |
J | GLN259 |
J | HOH508 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue GOL J 402 |
Chain | Residue |
F | GLY251 |
F | LEU252 |
F | GLN253 |
J | ARG155 |
J | GLU158 |
J | GLN253 |