6Y5X
Structure of apo New Jersey Polyomavirus VP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 93.15 |
Detector technology | PIXEL |
Collection date | 2014-08-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 86.480, 151.760, 130.910 |
Unit cell angles | 90.00, 106.85, 90.00 |
Refinement procedure
Resolution | 48.309 - 2.300 |
R-factor | 0.2037 |
Rwork | 0.202 |
R-free | 0.24320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fmg |
RMSD bond length | 0.002 |
RMSD bond angle | 0.528 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.16_3549: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.310 | 2.382 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmeas | 0.254 | 1.027 |
Number of reflections | 143717 | 14225 |
<I/σ(I)> | 6.66 | 1.58 |
Completeness [%] | 99.9 | 99.96 |
Redundancy | 5.78 | 5.8 |
CC(1/2) | 0.983 | 0.645 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | Succinic acid, PEG 3350 |