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6X6E

Glucocorticoid Receptor DNA binding domain in complex with methylated precursor for a modern recognition element (methylated pre-GBS)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
A0008270molecular_functionzinc ion binding
A0043565molecular_functionsequence-specific DNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0006355biological_processregulation of DNA-templated transcription
B0008270molecular_functionzinc ion binding
B0043565molecular_functionsequence-specific DNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS421
ACYS424
ACYS438
ACYS441

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 502
ChainResidue
ACYS457
ACYS463
ACYS473
ACYS476

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS424
BCYS438
BCYS441
BCYS421

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 502
ChainResidue
BCYS457
BCYS463
BCYS473
BCYS476

site_idAC5
Number of Residues10
Detailsbinding site for Di-nucleotide DC D 29 and 5CM D 30
ChainResidue
APHE444
AARG447
APRO474
CDC7
CDG8
CDG9
CDA10
DDT28
DDG31
DHOH101

site_idAC6
Number of Residues15
Detailsbinding site for Di-nucleotide 5CM D 30 and DG D 31
ChainResidue
ASER440
APHE444
AARG447
AARG470
ALYS471
APRO474
AARG477
AHOH606
CDA6
CDC7
CDG8
CDG9
DDC29
DDT32
DHOH101

Functional Information from PROSITE/UniProt
site_idPS00031
Number of Residues27
DetailsNUCLEAR_REC_DBD_1 Nuclear hormones receptors DNA-binding region signature. ClvCs.Deasgc.HYgvltCgsCkvFFkR
ChainResidueDetails
ACYS421-ARG447

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues78
DetailsZinc finger: {"description":"NR C4-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00407","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19141540","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P06537","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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