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6WJT

2.0 Angstrom Resolution Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in Complex with S-Adenosyl-L-Homocysteine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004483molecular_functionmethyltransferase cap1 activity
B0003723molecular_functionRNA binding
B0008270molecular_functionzinc ion binding
B0019079biological_processviral genome replication
C0004483molecular_functionmethyltransferase cap1 activity
D0003723molecular_functionRNA binding
D0008270molecular_functionzinc ion binding
D0019079biological_processviral genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 7101
ChainResidue
AARG6884
AGLN6885
ALEU6887
AHOH7247
AHOH7385

site_idAC2
Number of Residues21
Detailsbinding site for residue SAH A 7102
ChainResidue
APRO6878
AGLY6879
AASP6897
ALEU6898
AASN6899
AASP6912
ACYS6913
AASP6928
AMET6929
ATYR6930
APHE6947
AHOH7207
AHOH7244
AHOH7281
AHOH7305
AHOH7349
AHOH7381
AASN6841
ATYR6845
AGLY6869
AGLY6871

site_idAC3
Number of Residues8
Detailsbinding site for residue FMT A 7103
ChainResidue
ATYR6930
ATHR6934
ATHR6970
AGLU6971
AHIS6972
ASER7000
AFMT7104
AHOH7329

site_idAC4
Number of Residues4
Detailsbinding site for residue FMT A 7104
ChainResidue
ASER6999
ASER7000
AFMT7103
AHOH7329

site_idAC5
Number of Residues7
Detailsbinding site for residue FMT A 7105
ChainResidue
ATRP6988
AARG7014
AGLU7015
AILE7017
AHOH7226
AHOH7296
DMET4316

site_idAC6
Number of Residues5
Detailsbinding site for residue FMT A 7106
ChainResidue
AARG6864
AASN6920
ALYS6921
AGLU7082
AASN7084

site_idAC7
Number of Residues5
Detailsbinding site for residue FMT A 7107
ChainResidue
AASN6853
ALEU7050
ALYS7051
AHOH7250
AHOH7301

site_idAC8
Number of Residues6
Detailsbinding site for residue FMT A 7108
ChainResidue
ASER6943
AGLU6945
AASN6975
AASP6977
AHOH7254
AHOH7337

site_idAC9
Number of Residues4
Detailsbinding site for residue FMT A 7109
ChainResidue
AALA6919
AGLN6957
ALYS6958
AHOH7249

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 4401
ChainResidue
BCYS4327
BCYS4330
BHIS4336
BCYS4343

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN B 4402
ChainResidue
BCYS4370
BCYS4373
BCYS4381
BCYS4383

site_idAD3
Number of Residues6
Detailsbinding site for residue FMT B 4403
ChainResidue
AHOH7350
BMET4297
BLEU4298
BCYS4299
BHIS4301
CLEU6812

site_idAD4
Number of Residues5
Detailsbinding site for residue NA C 7101
ChainResidue
CARG6884
CGLN6885
CLEU6887
CHOH7276
CHOH7396

site_idAD5
Number of Residues21
Detailsbinding site for residue SAH C 7102
ChainResidue
CPHE6947
CHOH7206
CHOH7228
CHOH7236
CHOH7313
CHOH7359
CASN6841
CTYR6845
CGLY6869
CGLY6871
CSER6872
CPRO6878
CGLY6879
CASP6897
CLEU6898
CASN6899
CASP6912
CCYS6913
CASP6928
CMET6929
CTYR6930

site_idAD6
Number of Residues5
Detailsbinding site for residue FMT C 7103
ChainResidue
CARG6864
CASN6920
CLYS6921
CGLU7082
CASN7084

site_idAD7
Number of Residues6
Detailsbinding site for residue FMT C 7104
ChainResidue
CTYR6930
CTHR6934
CTHR6970
CGLU6971
CHIS6972
CHOH7297

site_idAD8
Number of Residues6
Detailsbinding site for residue FMT C 7105
ChainResidue
CPRO6810
CASN6811
CHOH7232
CHOH7293
CHOH7301
CHOH7364

site_idAD9
Number of Residues4
Detailsbinding site for residue FMT C 7106
ChainResidue
CALA6919
CLYS6921
CLYS6958
CHOH7289

site_idAE1
Number of Residues4
Detailsbinding site for residue FMT C 7107
ChainResidue
CILE6910
CTHR6915
CSER7090
CASP7091

site_idAE2
Number of Residues4
Detailsbinding site for residue ZN D 4401
ChainResidue
DCYS4327
DCYS4330
DHIS4336
DCYS4343

site_idAE3
Number of Residues4
Detailsbinding site for residue ZN D 4402
ChainResidue
DCYS4370
DCYS4373
DCYS4381
DCYS4383

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01297
ChainResidueDetails
BCYS4327
DCYS4330
DHIS4336
DCYS4343
DCYS4370
DCYS4373
DCYS4381
DCYS4383
BCYS4330
BHIS4336
BCYS4343
BCYS4370
BCYS4373
BCYS4381
BCYS4383
DCYS4327

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3
ChainResidueDetails
BGLN4392
DGLN4392

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PDB entries from 2025-06-18

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