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6WCW

Structure of human Rubicon RH domain in complex with GTP-bound Rab7

Functional Information from GO Data
ChainGOidnamespacecontents
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues22
Detailsbinding site for residue GTP B 1401
ChainResidue
BSER17
BASN35
BTYR37
BTHR40
BTHR64
BGLY66
BASN125
BLYS126
BASP128
BLEU129
BSER155
BGLY18
BALA156
BLYS157
BMG1402
BVAL19
BGLY20
BLYS21
BTHR22
BSER23
BPHE33
BSER34

site_idAC2
Number of Residues6
Detailsbinding site for residue MG B 1402
ChainResidue
BLYS21
BTHR22
BTHR40
BASP63
BTHR64
BGTP1401

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1001
ChainResidue
ACYS721
ACYS724
ACYS747
ACYS750

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 1002
ChainResidue
ACYS826
AHIS877
ACYS881
ACYS884

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 1003
ChainResidue
ACYS891
ACYS894
AHIS920
ACYS923

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 1004
ChainResidue
ACYS912
ACYS915
ACYS929
ACYS932

Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VIIlGDSGVGKtsL
ChainResidueDetails
BVAL11-LEU24

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:20028791, ECO:0007744|PDB:3LAW
ChainResidueDetails
BSER17
BVAL19

site_idSWS_FT_FI2
Number of Residues11
DetailsBINDING: BINDING => ECO:0000269|PubMed:15933719, ECO:0000305|PubMed:20028791, ECO:0007744|PDB:1T91, ECO:0007744|PDB:1YHN, ECO:0007744|PDB:3LAW
ChainResidueDetails
BGLY18
BALA156
BLYS157
BGLY20
BLYS21
BSER23
BASN35
BGLY66
BASN125
BLYS126
BASP128

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15933719, ECO:0000269|PubMed:20028791, ECO:0007744|PDB:1T91, ECO:0007744|PDB:1YHN, ECO:0007744|PDB:3LAW
ChainResidueDetails
BTHR22
BTHR40

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15933719, ECO:0007744|PDB:1YHN
ChainResidueDetails
BSER34
BTYR37

site_idSWS_FT_FI5
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15933719, ECO:0000269|PubMed:20028791, ECO:0007744|PDB:1YHN, ECO:0007744|PDB:3LAW
ChainResidueDetails
BASP63

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: N-acetylthreonine => ECO:0007744|PubMed:25944712
ChainResidueDetails
BTHR2

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine; by LRRK1 => ECO:0000269|PubMed:36040231, ECO:0000269|PubMed:37857821, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER72

237735

PDB entries from 2025-06-18

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