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6W8W

Crystal structure of mouse DNMT1 in complex with CCG DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003682molecular_functionchromatin binding
A0008168molecular_functionmethyltransferase activity
B0003682molecular_functionchromatin binding
B0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue SAH A 1701
ChainResidue
APHE1148
AASP1193
ACYS1194
AGLY1226
ALEU1250
AASN1580
AALA1581
AVAL1582
DC4918
ASER1149
AGLY1150
AGLY1152
AGLY1153
ALEU1154
AGLU1171
AMET1172
ATRP1173

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 1702
ChainResidue
ACYS1479
ACYS1481
ACYS1487
AHIS1504
AHOH1811

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1703
ChainResidue
AHIS796
ACYS823
ACYS897
ACYS900

site_idAC4
Number of Residues17
Detailsbinding site for residue SAH B 1701
ChainResidue
BPHE1148
BSER1149
BGLY1150
BGLY1152
BGLY1153
BLEU1154
BILE1170
BGLU1171
BMET1172
BTRP1173
BASP1193
BCYS1194
BGLY1226
BASN1580
BALA1581
BVAL1582
FC4918

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 1702
ChainResidue
BCYS1479
BCYS1481
BCYS1487
BHIS1504

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 1703
ChainResidue
BHIS796
BCYS823
BCYS897
BCYS900

site_idAC7
Number of Residues19
Detailsbinding site for Di-nucleotide DC D 17 and C49 D 18
ChainResidue
ALYS985
AGLY1226
APRO1227
APRO1228
ACYS1229
ASER1233
AMET1235
AGLU1269
AVAL1271
ATHR1312
AARG1313
AARG1314
AARG1315
ATHR1527
AGLY1579
AASN1580
ASAH1701
DDT16
DDG19

site_idAC8
Number of Residues23
Detailsbinding site for Di-nucleotide C49 D 18 and DG D 19
ChainResidue
AGLY1226
APRO1227
APRO1228
ACYS1229
AGLN1230
ASER1233
AMET1235
AASN1236
AARG1237
AGLU1269
AVAL1271
AARG1313
AARG1315
ATHR1530
AGLY1536
ALYS1537
AGLY1579
AASN1580
ASAH1701
CDA5
C5CM6
DDC17
DDT20

site_idAC9
Number of Residues13
Detailsbinding site for Di-nucleotide DA E 5 and 5CM E 6
ChainResidue
BTRP1512
BMET1535
EDT4
EDG7
FDG19
FDT20
FDA21
BARG1237
BARG1492
BCYS1501
BHIS1504
BTHR1505
BHIS1509

site_idAD1
Number of Residues14
Detailsbinding site for Di-nucleotide 5CM E 6 and DG E 7
ChainResidue
BGLY1234
BMET1235
BASN1236
BARG1237
BCYS1501
BHIS1504
BTHR1505
BARG1508
BHIS1509
BTRP1512
BMET1535
EDA5
EDG8
FDG19

site_idAD2
Number of Residues17
Detailsbinding site for Di-nucleotide DC F 17 and C49 F 18
ChainResidue
BLYS985
BGLY1226
BPRO1227
BPRO1228
BCYS1229
BSER1233
BMET1235
BGLU1269
BVAL1271
BARG1313
BARG1314
BARG1315
BTHR1527
BASN1580
BSAH1701
FDT16
FDG19

site_idAD3
Number of Residues20
Detailsbinding site for Di-nucleotide C49 F 18 and DG F 19
ChainResidue
BGLY1226
BPRO1227
BPRO1228
BCYS1229
BSER1233
BMET1235
BARG1237
BGLU1269
BVAL1271
BARG1313
BARG1315
BTHR1530
BGLY1536
BLYS1537
BASN1580
BSAH1701
EDA5
E5CM6
FDC17
FDT20

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. EmLcgGpPCqGFS
ChainResidueDetails
AGLU1221-SER1233

site_idPS00095
Number of Residues19
DetailsC5_MTASE_2 C-5 cytosine-specific DNA methylases C-terminal signature. RqvGNAVpPpLakaIgleI
ChainResidueDetails
AARG1576-ILE1594

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:17576694
ChainResidueDetails
ACYS1229
BCYS1229

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:4DA4
ChainResidueDetails
ASER1149
BSER1149

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9, ECO:0007744|PDB:4DA4
ChainResidueDetails
AGLY1153
AGLU1171
AVAL1582
BGLY1153
BGLU1171
BVAL1582

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:21163962, ECO:0007744|PDB:3PT6, ECO:0007744|PDB:3PT9
ChainResidueDetails
AASP1193
BASP1193

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P26358
ChainResidueDetails
ASER735
ASER882
BSER735
BSER882

site_idSWS_FT_FI6
Number of Residues22
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P26358
ChainResidueDetails
ALYS752
ALYS1352
ALYS1418
BLYS752
BLYS895
BLYS961
BLYS965
BLYS979
BLYS1114
BLYS1116
BLYS1118
ALYS895
BLYS1120
BLYS1352
BLYS1418
ALYS961
ALYS965
ALYS979
ALYS1114
ALYS1116
ALYS1118
ALYS1120

site_idSWS_FT_FI7
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:23806337
ChainResidueDetails
ALYS1122
ALYS1124
BLYS1122
BLYS1124

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PDB entries from 2024-10-09

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