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6W4R

Structure of Tdp1 catalytic domain in complex with inhibitor XZ633p

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0008081molecular_functionphosphoric diester hydrolase activity
B0005634cellular_componentnucleus
B0006281biological_processDNA repair
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue MPO A 701
ChainResidue
AHIS263
AHOH994
ASER400
AVAL401
APRO461
ASER518
AALA520
ASZV702
AHOH956
AHOH959

site_idAC2
Number of Residues15
Detailsbinding site for residue SZV A 702
ChainResidue
ATYR204
ATHR261
AHIS263
ALYS265
AASN283
ASER399
APRO461
AHIS493
ALYS495
AASN516
AMPO701
AHOH894
AHOH1006
AHOH1013
AHOH1086

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO A 703
ChainResidue
AILE355
AGLY356
ASER357
ATHR513
AALA515
ATRP522
AGLY540

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 704
ChainResidue
AASP322
AASN369
AARG374
AHOH933

site_idAC5
Number of Residues13
Detailsbinding site for residue SZV B 701
ChainResidue
BTYR204
BTHR261
BHIS263
BLYS265
BASN283
BSER399
BPRO461
BHIS493
BLYS495
BASN516
BHOH828
BHOH840
BHOH882

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO B 702
ChainResidue
BILE355
BGLY356
BSER357
BTHR513
BALA515
BTRP522
BGLY540

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO B 703
ChainResidue
BTHR484
BLYS556
BGLN557
BTYR574
BLEU576

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO B 704
ChainResidue
AGLY549
BILE305
BLYS311
BSER312
BLYS320
BHIS343
BHOH1003

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:12470949, ECO:0000269|PubMed:15111055
ChainResidueDetails
BHIS263
AHIS263

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000269|PubMed:12470949, ECO:0000269|PubMed:15111055
ChainResidueDetails
BHIS493
AHIS493

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:12470949
ChainResidueDetails
BLYS265
BLYS495
ALYS265
ALYS495

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Interaction with DNA => ECO:0000269|PubMed:12470949
ChainResidueDetails
BSER518
ASER518

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19690332
ChainResidueDetails
BSER148
ASER148

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PDB entries from 2024-05-15

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