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6VRD

Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
A0004540molecular_functionRNA nuclease activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006401biological_processRNA catabolic process
A0043137biological_processDNA replication, removal of RNA primer
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue SO4 A 301
ChainResidue
AARG153
AARG154
AHOH401
AHOH437
AHOH480
BHOH148

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 302
ChainResidue
BHOH110
AARG153
AHOH406
AHOH444

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 303
ChainResidue
AARG157
AARG175
ASER284
AGLU285

site_idAC4
Number of Residues7
Detailsbinding site for residue PEG C 201
ChainResidue
CSC10
CSC11
CSC12
CHOH302
CHOH328
CHOH340
CHOH344

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 C 202
ChainResidue
CA2M5
CSC6
CHOH308
CHOH331
CHOH339
CHOH357

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00408
ChainResidueDetails
AASP145
AGLU186
AASN210
AASP274

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PDB entries from 2024-10-09

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