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6VGM

Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0003677molecular_functionDNA binding
D0003684molecular_functiondamaged DNA binding
D0003887molecular_functionDNA-directed DNA polymerase activity
D0005737cellular_componentcytoplasm
D0006260biological_processDNA replication
D0006261biological_processDNA-templated DNA replication
D0006281biological_processDNA repair
D0006974biological_processDNA damage response
D0042276biological_processerror-prone translesion synthesis
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue 1FZ A 401
ChainResidue
AASP7
AARG51
AALA57
AILE104
AASP105
ALYS159
AMG402
AMG403
PDC13
TA385
APHE8
AASP9
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 402
ChainResidue
AASP7
APHE8
AASP105
A1FZ401

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AASP7
AASP105
AGLU106
A1FZ401
PDC13

site_idAC4
Number of Residues6
Detailsbinding site for residue MG B 101
ChainResidue
BDC13
DASP7
DASP105
DGLU106
D1FZ401
DMG402

site_idAC5
Number of Residues16
Detailsbinding site for residue 1FZ D 401
ChainResidue
BDC13
BMG101
CA385
DASP7
DPHE8
DTYR10
DPHE11
DTYR12
DALA44
DTHR45
DTYR48
DARG51
DALA57
DASP105
DLYS159
DMG402

site_idAC6
Number of Residues6
Detailsbinding site for residue MG D 402
ChainResidue
BMG101
DASP7
DPHE8
DASP105
DLYS159
D1FZ401

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
DGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
DASP7
DASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
DTYR12

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PDB entries from 2024-07-24

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