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6VGM

Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]120
Detector technologyPIXEL
Collection date2018-10-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.98
Spacegroup nameP 1 21 1
Unit cell lengths52.835, 97.459, 101.237
Unit cell angles90.00, 90.05, 90.00
Refinement procedure
Resolution42.230 - 2.840
Rwork0.230
R-free0.27980
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jx4
RMSD bond length0.010
RMSD bond angle0.942
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.890
High resolution limit [Å]2.8402.840
Rpim0.0750.725
Number of reflections240431289
<I/σ(I)>15.9
Completeness [%]98.5
Redundancy3.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529350 mM Tris 100 mM Magnesium Acetate 16% PEG 3350

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