6VGM
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 23-ID-D |
| Synchrotron site | APS |
| Beamline | 23-ID-D |
| Temperature [K] | 120 |
| Detector technology | PIXEL |
| Collection date | 2018-10-14 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.98 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 52.835, 97.459, 101.237 |
| Unit cell angles | 90.00, 90.05, 90.00 |
Refinement procedure
| Resolution | 42.230 - 2.840 |
| Rwork | 0.230 |
| R-free | 0.27980 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1jx4 |
| RMSD bond length | 0.010 |
| RMSD bond angle | 0.942 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.17) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.890 |
| High resolution limit [Å] | 2.840 | 2.840 |
| Rpim | 0.075 | 0.725 |
| Number of reflections | 24043 | 1289 |
| <I/σ(I)> | 15.9 | |
| Completeness [%] | 98.5 | |
| Redundancy | 3.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 50 mM Tris 100 mM Magnesium Acetate 16% PEG 3350 |






