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6U8W

Crystal structure of DNMT3B(K777A)-DNMT3L in complex with CpGpT DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
D0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue SAH A 901
ChainResidue
APHE581
AASP627
AVAL628
AGLY648
ALEU671
AARG832
ASER833
ATRP834
AASP582
AGLY583
AILE584
ATHR586
ASER604
AGLU605
AVAL606
ACYS607

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 902
ChainResidue
AASN717
AGLY737
AMET742

site_idAC3
Number of Residues14
Detailsbinding site for residue SAH D 901
ChainResidue
DPHE581
DASP582
DGLY583
DILE584
DTHR586
DSER604
DGLU605
DCYS607
DASP627
DVAL628
DGLY648
DARG832
DSER833
DTRP834

site_idAC4
Number of Residues4
Detailsbinding site for residue MG D 902
ChainResidue
DCYS716
DASN717
DGLY737
DMET742

site_idAC5
Number of Residues15
Detailsbinding site for Di-nucleotide DG E 426 and PYO E 427
ChainResidue
DSER649
DCYS651
DSER655
DGLU697
DVAL699
DARG731
DARG733
DGLN772
DTHR773
DGLY831
DARG832
EDT425
EDG428
FDG442
FDC443

site_idAC6
Number of Residues16
Detailsbinding site for Di-peptide PYO E 427 and CYS D 651
ChainResidue
DSER649
DPRO650
DASN652
DASP653
DLEU654
DSER655
DGLU697
DASN698
DVAL699
DARG731
DARG733
DTHR773
DGLY831
DARG832
EDG426
EDG428

site_idAC7
Number of Residues19
Detailsbinding site for Di-nucleotide PYO E 427 and DG E 428
ChainResidue
DSER649
DCYS651
DASN652
DSER655
DVAL657
DASN658
DGLU697
DVAL699
DARG731
DARG733
DTHR773
DTHR776
DASN779
DGLY831
DARG832
EDG426
EDT429
FDC441
FDG442

site_idAC8
Number of Residues16
Detailsbinding site for Di-nucleotide DG F 426 and PYO F 427
ChainResidue
EDG442
EDC443
FDT425
FDG428
ASER649
ACYS651
ASER655
AVAL657
AGLU697
AVAL699
AARG731
AARG733
AGLN772
ATHR773
AGLY831
AARG832

site_idAC9
Number of Residues17
Detailsbinding site for Di-nucleotide PYO F 427 and DG F 428
ChainResidue
ASER649
ACYS651
ASER655
AVAL657
AASN658
AGLU697
AVAL699
AARG731
AARG733
ATHR773
ATHR776
AASN779
AGLY831
AARG832
EDC441
FDG426
FDT429

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DlVigGsPCnDLS
ChainResidueDetails
AASP643-SER655

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01016, ECO:0000255|PROSITE-ProRule:PRU10018
ChainResidueDetails
ACYS651
DCYS651

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q9Y6K1
ChainResidueDetails
AASP582
AGLU605
AASP627
AARG832
DASP582
DGLU605
DASP627
DARG832

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS617
DLYS617

222036

PDB entries from 2024-07-03

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