6TXR
Structural insights into cubane-modified aptamer recognition of a malaria biomarker
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0004459 | molecular_function | L-lactate dehydrogenase activity |
A | 0006089 | biological_process | lactate metabolic process |
A | 0006090 | biological_process | pyruvate metabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0019752 | biological_process | carboxylic acid metabolic process |
B | 0000166 | molecular_function | nucleotide binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004459 | molecular_function | L-lactate dehydrogenase activity |
B | 0006089 | biological_process | lactate metabolic process |
B | 0006090 | biological_process | pyruvate metabolic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0019752 | biological_process | carboxylic acid metabolic process |
C | 0000166 | molecular_function | nucleotide binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0004459 | molecular_function | L-lactate dehydrogenase activity |
C | 0006089 | biological_process | lactate metabolic process |
C | 0006090 | biological_process | pyruvate metabolic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0019752 | biological_process | carboxylic acid metabolic process |
D | 0000166 | molecular_function | nucleotide binding |
D | 0003824 | molecular_function | catalytic activity |
D | 0004459 | molecular_function | L-lactate dehydrogenase activity |
D | 0006089 | biological_process | lactate metabolic process |
D | 0006090 | biological_process | pyruvate metabolic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0019752 | biological_process | carboxylic acid metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue DG A 403 |
Chain | Residue |
A | DG404 |
A | DC414 |
C | DG423 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue DG A 404 |
Chain | Residue |
A | O0Q402 |
A | DG403 |
A | DU405 |
A | DA412 |
A | DC413 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue DG A 406 |
Chain | Residue |
A | DC410 |
A | DU411 |
A | DA412 |
A | DC413 |
B | DA405 |
B | DU413 |
A | DA407 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue DA A 407 |
Chain | Residue |
A | DG406 |
A | DC408 |
B | DC406 |
B | DG412 |
B | DU413 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue DC A 408 |
Chain | Residue |
A | LEU232 |
A | DA407 |
B | DC406 |
B | DG410 |
B | DG412 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue DC A 409 |
Chain | Residue |
A | ALA233 |
A | SER234 |
A | TYR236 |
A | O0Q401 |
A | DC410 |
B | O0Q402 |
B | DU413 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue DC A 410 |
Chain | Residue |
A | O0Q401 |
A | DG406 |
A | DC409 |
A | DU411 |
B | DU413 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue DA A 412 |
Chain | Residue |
A | DG404 |
A | DU405 |
A | DG406 |
A | DU411 |
A | DC413 |
B | DA405 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue DC A 413 |
Chain | Residue |
A | DG404 |
A | DG406 |
A | DA412 |
A | DC414 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue DC A 414 |
Chain | Residue |
A | DG403 |
A | DC413 |
A | DG415 |
C | DG423 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue DG A 415 |
Chain | Residue |
A | DC414 |
A | DA416 |
C | DG422 |
C | DG423 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue DA A 416 |
Chain | Residue |
A | DG415 |
A | DG417 |
C | DC421 |
C | DG422 |
C | DG423 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue DG A 417 |
Chain | Residue |
A | DA416 |
A | DG418 |
C | DA420 |
C | DC421 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue DG A 418 |
Chain | Residue |
A | DG417 |
A | DG419 |
C | DC419 |
C | DA420 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue DG A 419 |
Chain | Residue |
A | DG418 |
A | DC420 |
C | DG418 |
C | DC419 |
C | DA420 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue DC A 420 |
Chain | Residue |
A | DG419 |
A | DA421 |
C | DG417 |
C | DG418 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue DA A 421 |
Chain | Residue |
A | DC420 |
A | DC422 |
C | DG416 |
C | DG417 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue DC A 422 |
Chain | Residue |
A | DA421 |
A | DG423 |
C | DA415 |
C | DG416 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue DG A 423 |
Chain | Residue |
A | DC422 |
A | DG424 |
C | DG414 |
C | DA415 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue DG A 424 |
Chain | Residue |
A | DG423 |
A | DA425 |
C | DG403 |
C | DC413 |
C | DG414 |
C | DA415 |
site_id | AE3 |
Number of Residues | 1 |
Details | binding site for residue DA A 425 |
Chain | Residue |
A | DG424 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue DA B 403 |
Chain | Residue |
B | DU404 |
B | DA405 |
A | O0Q402 |
A | DU405 |
B | O0Q401 |
site_id | AE5 |
Number of Residues | 6 |
Details | binding site for residue DA B 405 |
Chain | Residue |
A | DU405 |
A | DG406 |
A | DU411 |
A | DA412 |
B | DA403 |
B | DU404 |
site_id | AE6 |
Number of Residues | 6 |
Details | binding site for residue DC B 406 |
Chain | Residue |
A | DA407 |
A | DC408 |
B | LYS38 |
B | DC407 |
B | DU409 |
B | DG410 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue DC B 407 |
Chain | Residue |
B | LYS38 |
B | DC406 |
B | DC408 |
B | DU409 |
site_id | AE8 |
Number of Residues | 2 |
Details | binding site for residue DC B 408 |
Chain | Residue |
B | DC407 |
B | DU409 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue DU B 409 |
Chain | Residue |
B | LYS38 |
B | DC406 |
B | DC407 |
B | DC408 |
B | DG410 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue DG B 410 |
Chain | Residue |
A | DC408 |
B | DC406 |
B | DU409 |
B | DA411 |
B | DG412 |
site_id | AF2 |
Number of Residues | 8 |
Details | binding site for residue DA B 411 |
Chain | Residue |
B | VAL36 |
B | TYR67 |
B | ALA80 |
B | GLY81 |
B | PHE82 |
B | GLU108 |
B | DG410 |
B | DG412 |
site_id | AF3 |
Number of Residues | 9 |
Details | binding site for residue DG B 412 |
Chain | Residue |
A | DA407 |
A | DC408 |
B | GLY13 |
B | VAL37 |
B | MET40 |
B | O0Q402 |
B | DG410 |
B | DA411 |
B | DU413 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue DG C 403 |
Chain | Residue |
A | DG424 |
C | DG404 |
C | DC412 |
C | DC413 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue DG C 404 |
Chain | Residue |
C | O0Q402 |
C | DG403 |
C | DU405 |
C | DA411 |
C | DC412 |
site_id | AF6 |
Number of Residues | 4 |
Details | binding site for residue DA C 406 |
Chain | Residue |
C | DC407 |
D | DG406 |
D | DG413 |
D | DU414 |
site_id | AF7 |
Number of Residues | 5 |
Details | binding site for residue DC C 407 |
Chain | Residue |
C | LEU232 |
C | DA406 |
D | DC407 |
D | DG411 |
D | DG413 |
site_id | AF8 |
Number of Residues | 8 |
Details | binding site for residue DC C 408 |
Chain | Residue |
C | MET14 |
C | ALA233 |
C | SER234 |
C | TYR236 |
C | O0Q401 |
C | DC409 |
D | O0Q401 |
D | DU414 |
site_id | AF9 |
Number of Residues | 4 |
Details | binding site for residue DC C 409 |
Chain | Residue |
C | DC408 |
C | DU410 |
D | DG406 |
D | DU414 |
site_id | AG1 |
Number of Residues | 6 |
Details | binding site for residue DA C 411 |
Chain | Residue |
C | DG404 |
C | DU405 |
C | DU410 |
C | DC412 |
D | DA405 |
D | DG406 |
site_id | AG2 |
Number of Residues | 6 |
Details | binding site for residue DC C 412 |
Chain | Residue |
C | DG403 |
C | DG404 |
C | DA411 |
C | DC413 |
D | LYS207 |
D | DG406 |
site_id | AG3 |
Number of Residues | 4 |
Details | binding site for residue DC C 413 |
Chain | Residue |
A | DG424 |
C | DG403 |
C | DC412 |
C | DG414 |
site_id | AG4 |
Number of Residues | 4 |
Details | binding site for residue DG C 414 |
Chain | Residue |
A | DG423 |
A | DG424 |
C | DC413 |
C | DA415 |
site_id | AG5 |
Number of Residues | 5 |
Details | binding site for residue DA C 415 |
Chain | Residue |
A | DC422 |
A | DG423 |
A | DG424 |
C | DG414 |
C | DG416 |
site_id | AG6 |
Number of Residues | 4 |
Details | binding site for residue DG C 416 |
Chain | Residue |
A | DA421 |
A | DC422 |
C | DA415 |
C | DG417 |
site_id | AG7 |
Number of Residues | 4 |
Details | binding site for residue DG C 417 |
Chain | Residue |
A | DC420 |
A | DA421 |
C | DG416 |
C | DG418 |
site_id | AG8 |
Number of Residues | 4 |
Details | binding site for residue DG C 418 |
Chain | Residue |
A | DG419 |
A | DC420 |
C | DG417 |
C | DC419 |
site_id | AG9 |
Number of Residues | 4 |
Details | binding site for residue DC C 419 |
Chain | Residue |
A | DG418 |
A | DG419 |
C | DG418 |
C | DA420 |
site_id | AH1 |
Number of Residues | 7 |
Details | binding site for residue DA C 420 |
Chain | Residue |
A | DG417 |
A | DG418 |
A | DG419 |
C | DC419 |
C | DC421 |
C | HOH503 |
C | HOH504 |
site_id | AH2 |
Number of Residues | 4 |
Details | binding site for residue DC C 421 |
Chain | Residue |
A | DA416 |
A | DG417 |
C | DA420 |
C | DG422 |
site_id | AH3 |
Number of Residues | 4 |
Details | binding site for residue DG C 422 |
Chain | Residue |
A | DG415 |
A | DA416 |
C | DC421 |
C | DG423 |
site_id | AH4 |
Number of Residues | 6 |
Details | binding site for residue DG C 423 |
Chain | Residue |
A | DG403 |
A | DC414 |
A | DG415 |
A | DA416 |
C | DG422 |
C | DA424 |
site_id | AH5 |
Number of Residues | 1 |
Details | binding site for residue DA C 424 |
Chain | Residue |
C | DG423 |
site_id | AH6 |
Number of Residues | 6 |
Details | binding site for residue DA D 403 |
Chain | Residue |
C | O0Q402 |
C | DU405 |
D | O0Q402 |
D | DU404 |
D | DA405 |
D | HOH523 |
site_id | AH7 |
Number of Residues | 7 |
Details | binding site for residue DA D 405 |
Chain | Residue |
C | DU405 |
C | DU410 |
C | DA411 |
D | LYS84 |
D | DA403 |
D | DU404 |
D | DG406 |
site_id | AH8 |
Number of Residues | 7 |
Details | binding site for residue DG D 406 |
Chain | Residue |
C | DA406 |
C | DC409 |
C | DU410 |
C | DA411 |
C | DC412 |
D | DA405 |
D | DU414 |
site_id | AH9 |
Number of Residues | 4 |
Details | binding site for residue DC D 407 |
Chain | Residue |
C | DC407 |
D | DC408 |
D | DU410 |
D | DG411 |
site_id | AI1 |
Number of Residues | 6 |
Details | binding site for residue DC D 408 |
Chain | Residue |
C | GLY269 |
C | HIS270 |
D | LYS38 |
D | DC407 |
D | DC409 |
D | DU410 |
site_id | AI2 |
Number of Residues | 2 |
Details | binding site for residue DC D 409 |
Chain | Residue |
D | DC408 |
D | DU410 |
site_id | AI3 |
Number of Residues | 4 |
Details | binding site for residue DU D 410 |
Chain | Residue |
D | DC407 |
D | DC408 |
D | DC409 |
D | DG411 |
site_id | AI4 |
Number of Residues | 5 |
Details | binding site for residue DG D 411 |
Chain | Residue |
C | DC407 |
D | DC407 |
D | DU410 |
D | DA412 |
D | DG413 |
site_id | AI5 |
Number of Residues | 9 |
Details | binding site for residue DA D 412 |
Chain | Residue |
D | VAL36 |
D | TYR67 |
D | ALA80 |
D | GLY81 |
D | PHE82 |
D | ILE105 |
D | GLU108 |
D | DG411 |
D | DG413 |
site_id | AI6 |
Number of Residues | 10 |
Details | binding site for residue DG D 413 |
Chain | Residue |
C | DA406 |
C | DC407 |
D | GLY13 |
D | VAL37 |
D | MET40 |
D | O0Q401 |
D | DG411 |
D | DA412 |
D | DU414 |
D | HOH521 |
site_id | AI7 |
Number of Residues | 9 |
Details | binding site for Di-nucleotide O0Q A 401 and DU A 411 |
Chain | Residue |
A | MET14 |
A | DG406 |
A | DC409 |
A | DC410 |
A | DA412 |
B | LEU232 |
B | O0Q401 |
B | DU404 |
B | DA405 |
site_id | AI8 |
Number of Residues | 6 |
Details | binding site for Di-nucleotide O0Q A 402 and DU A 405 |
Chain | Residue |
A | LYS38 |
A | DG404 |
A | DA412 |
B | O0Q401 |
B | DA403 |
B | DA405 |
site_id | AI9 |
Number of Residues | 9 |
Details | binding site for Di-nucleotide O0Q B 401 and DU B 404 |
Chain | Residue |
A | ASN39 |
A | O0Q401 |
A | O0Q402 |
A | DU411 |
B | LEU231 |
B | LEU232 |
B | O0Q402 |
B | DA403 |
B | DA405 |
site_id | AJ1 |
Number of Residues | 11 |
Details | binding site for Di-nucleotide O0Q B 402 and DU B 413 |
Chain | Residue |
A | DG406 |
A | DA407 |
A | DC409 |
A | DC410 |
B | GLY13 |
B | MET14 |
B | MET40 |
B | LYS44 |
B | ALA233 |
B | DU404 |
B | DG412 |
site_id | AJ2 |
Number of Residues | 9 |
Details | binding site for Di-nucleotide O0Q C 401 and DU C 410 |
Chain | Residue |
C | MET14 |
C | DC408 |
C | DC409 |
C | DA411 |
D | LEU232 |
D | O0Q402 |
D | DU404 |
D | DA405 |
D | DG406 |
site_id | AJ3 |
Number of Residues | 7 |
Details | binding site for Di-nucleotide O0Q C 402 and DU C 405 |
Chain | Residue |
C | VAL37 |
C | DG404 |
C | DA411 |
C | HOH501 |
D | O0Q402 |
D | DA403 |
D | DA405 |
site_id | AJ4 |
Number of Residues | 11 |
Details | binding site for Di-nucleotide O0Q D 401 and DU D 414 |
Chain | Residue |
C | DA406 |
C | DC408 |
C | DC409 |
D | GLY13 |
D | MET14 |
D | LYS44 |
D | ALA233 |
D | O0Q402 |
D | DU404 |
D | DG406 |
D | DG413 |
site_id | AJ5 |
Number of Residues | 12 |
Details | binding site for Di-nucleotide O0Q D 402 and DU D 404 |
Chain | Residue |
C | VAL37 |
C | ASN39 |
C | MET40 |
C | O0Q401 |
C | O0Q402 |
C | DU410 |
D | ASN230 |
D | LEU231 |
D | LEU232 |
D | O0Q401 |
D | DA403 |
D | DA405 |