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6TMO

Structure determination of an enhanced affinity TCR, a24b17, in complex with HLA-A*02:01 presenting a MART-1 peptide, EAAGIGILTV

Functional Information from GO Data
ChainGOidnamespacecontents
B0000139cellular_componentGolgi membrane
B0001913biological_processT cell mediated cytotoxicity
B0001916biological_processpositive regulation of T cell mediated cytotoxicity
B0002237biological_processresponse to molecule of bacterial origin
B0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
B0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
B0002502biological_processpeptide antigen assembly with MHC class I protein complex
B0002503biological_processpeptide antigen assembly with MHC class II protein complex
B0002726biological_processpositive regulation of T cell cytokine production
B0005198molecular_functionstructural molecule activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005765cellular_componentlysosomal membrane
B0005783cellular_componentendoplasmic reticulum
B0005788cellular_componentendoplasmic reticulum lumen
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006955biological_processimmune response
B0007608biological_processsensory perception of smell
B0007611biological_processlearning or memory
B0009897cellular_componentexternal side of plasma membrane
B0009986cellular_componentcell surface
B0010977biological_processnegative regulation of neuron projection development
B0012507cellular_componentER to Golgi transport vesicle membrane
B0016020cellular_componentmembrane
B0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
B0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
B0023026molecular_functionMHC class II protein complex binding
B0030670cellular_componentphagocytic vesicle membrane
B0031901cellular_componentearly endosome membrane
B0031902cellular_componentlate endosome membrane
B0031905cellular_componentearly endosome lumen
B0032092biological_processpositive regulation of protein binding
B0033077biological_processT cell differentiation in thymus
B0034756biological_processregulation of iron ion transport
B0035580cellular_componentspecific granule lumen
B0042026biological_processprotein refolding
B0042605molecular_functionpeptide antigen binding
B0042612cellular_componentMHC class I protein complex
B0042613cellular_componentMHC class II protein complex
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0042824cellular_componentMHC class I peptide loading complex
B0045646biological_processregulation of erythrocyte differentiation
B0048260biological_processpositive regulation of receptor-mediated endocytosis
B0050680biological_processnegative regulation of epithelial cell proliferation
B0050768biological_processnegative regulation of neurogenesis
B0050778biological_processpositive regulation of immune response
B0050870biological_processpositive regulation of T cell activation
B0051289biological_processprotein homotetramerization
B0055038cellular_componentrecycling endosome membrane
B0060586biological_processmulticellular organismal-level iron ion homeostasis
B0070062cellular_componentextracellular exosome
B0071281biological_processcellular response to iron ion
B0071283biological_processcellular response to iron(III) ion
B0071316biological_processcellular response to nicotine
B1900121biological_processnegative regulation of receptor binding
B1900122biological_processpositive regulation of receptor binding
B1904434biological_processpositive regulation of ferrous iron binding
B1904437biological_processpositive regulation of transferrin receptor binding
B1904724cellular_componenttertiary granule lumen
B1990000biological_processamyloid fibril formation
B1990712cellular_componentHFE-transferrin receptor complex
B2000774biological_processpositive regulation of cellular senescence
B2000978biological_processnegative regulation of forebrain neuron differentiation
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue GOL A 301
ChainResidue
AGLU58
AASP61
AARG65
DGLU3
DPHE27
DASP93
DARG96
EHOH428

site_idAC2
Number of Residues8
Detailsbinding site for residue GOL A 302
ChainResidue
ASER38
AGLN43
ALYS68
ASER71
AGLN72
AHOH432
AHOH478
APHE22

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 303
ChainResidue
ASER4
AARG6
ATYR27
AASP29
AHOH459

site_idAC4
Number of Residues1
Detailsbinding site for residue EDO A 304
ChainResidue
AARG170

site_idAC5
Number of Residues2
Detailsbinding site for residue EDO A 305
ChainResidue
APRO47
AGLU53

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 306
ChainResidue
AGLY120
ALYS121
AASP122
BARG3
BASP59

site_idAC7
Number of Residues4
Detailsbinding site for residue EDO A 307
ChainResidue
ASER2
AHIS3
AASP102
AHOH430

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 A 308
ChainResidue
AGLN87
AHIS93
AARG157
ATAM310
AHOH402
DARG52

site_idAC9
Number of Residues6
Detailsbinding site for residue SO4 A 309
ChainResidue
ASER88
AGLU89
AALA90
APHE109
ALEU110
AHOH458

site_idAD1
Number of Residues9
Detailsbinding site for residue TAM A 310
ChainResidue
ASER92
AHIS93
ALEU130
AARG131
AGLU154
AARG157
ASO4308
AHOH408
DARG52

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO B 101
ChainResidue
AARG234
AGLN242
BTYR10
BSER11
BHIS13
BPRO14

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 B 102
ChainResidue
AARG21
BHIS51
BHOH204
BHOH223

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL D 201
ChainResidue
BTHR4
BTHR86
BHOH201
DILE47
DMET48
DPHE49
DLYS56
DASP58

site_idAD5
Number of Residues7
Detailsbinding site for residue EDO D 202
ChainResidue
DGLN38
DTYR39
DSER40
DTHR86
DHOH301
EASP226
ETAM305

site_idAD6
Number of Residues9
Detailsbinding site for residue GOL E 301
ChainResidue
AGLN155
AHOH449
CLEU8
EGLU95
ETHR96
EGLY99
EMET100
EGLY101
EHOH464

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO E 302
ChainResidue
ELEU11
EVAL12
EGLY216
ETHR232
EHOH405

site_idAD8
Number of Residues5
Detailsbinding site for residue SO4 E 303
ChainResidue
EASN63
ELEU64
ESER65
ESER78
ELYS79

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 E 304
ChainResidue
ESER20
ELEU21
EGLU22
ETRP7

site_idAE1
Number of Residues12
Detailsbinding site for residue TAM E 305
ChainResidue
DGLN38
DGLY41
DLYS42
DEDO202
EGLN38
EALA39
EALA40
EGLY41
EPHE88
EARG110
EGLN225
EASP226

site_idAE2
Number of Residues10
Detailsbinding site for residue TAM E 306
ChainResidue
AARG44
AASP61
AARG65
DARG96
ELEU46
ESER57
ESER58
EGLU59
EHOH402
EHOH425

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCHVQH
ChainResidueDetails
ATYR257-HIS263
BTYR78-HIS84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
ChainResidueDetails
BGLN2

site_idSWS_FT_FI2
Number of Residues1
DetailsCARBOHYD: N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443
ChainResidueDetails
BILE1

site_idSWS_FT_FI3
Number of Residues6
DetailsCARBOHYD: N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
ChainResidueDetails
BLYS19
BLYS41
BLYS48
BLYS58
BLYS91
BLYS94

220472

PDB entries from 2024-05-29

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