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6TM3

Structure of methylene-tetrahydromethanopterin dehydrogenase from Methylorubrum extorquens AM1 in a close conformation containing NADP+ and methylene-H4MPT

Functional Information from GO Data
ChainGOidnamespacecontents
A0004488molecular_functionmethylenetetrahydrofolate dehydrogenase (NADP+) activity
A0005737cellular_componentcytoplasm
A0006730biological_processone-carbon metabolic process
A0016491molecular_functionoxidoreductase activity
A0046294biological_processformaldehyde catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues35
Detailsbinding site for residue NAP A 401
ChainResidue
AASN97
ALYS156
AALA196
AGLY197
AALA198
AILE199
ALEU201
ATYR221
AALA249
AGLY253
ALYS256
ATHR102
AH4M403
AHOH531
AHOH559
AHOH579
AHOH590
AHOH596
AHOH599
AHOH601
AHOH632
AHOH645
AALA127
AHOH665
AHOH690
AHOH704
AHOH732
AHOH755
AHOH802
ATHR129
AGLY130
APRO131
AVAL132
AGLY151
AARG152

site_idAC2
Number of Residues13
Detailsbinding site for residue GOL A 402
ChainResidue
AGLN158
AASP162
AASN165
AVAL172
AEDO415
AHOH510
AHOH522
AHOH535
AHOH614
AHOH643
AHOH767
AHOH809
AHOH838

site_idAC3
Number of Residues19
Detailsbinding site for residue H4M A 403
ChainResidue
ASER16
APHE18
AASP19
ATYR51
ATHR52
AARG53
AGLY54
AASN97
AGLY98
ALEU250
AGLY253
ALYS256
ALEU257
ANAP401
AEDO404
AHOH505
AHOH577
AHOH668
AHOH977

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 404
ChainResidue
ASER16
AH4M403
AHOH583
AHOH603
AHOH850
AHOH934
AHOH970
AHOH977

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
ALEU139
AGLU278
AHOH501
AHOH582
AHOH604

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
AGLY68
AHOH560
AHOH579
AHOH600
AHOH719

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 407
ChainResidue
AGLU279
ALYS282
ALEU283
AEDO417
AHOH594
AHOH649
AHOH718

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO A 408
ChainResidue
AGLY242
AGLY243
ALYS244
AHOH520

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 410
ChainResidue
AHOH578
AHOH653
AHOH862
APHE85
ALYS166
APRO225

site_idAD1
Number of Residues8
Detailsbinding site for residue EDO A 411
ChainResidue
APRO39
AASP40
ALYS82
AEDO416
AHOH533
AHOH543
AHOH672
AHOH745

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 412
ChainResidue
ALYS3
AASP29
AHIS30
AHOH606
AHOH689

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO A 413
ChainResidue
AARG152
AHOH710
AHOH754
AHOH812

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 414
ChainResidue
AARG83
AGLN224
AHOH680

site_idAD5
Number of Residues10
Detailsbinding site for residue EDO A 415
ChainResidue
APHE85
APHE88
AALA223
ALEU227
AALA234
ALEU250
AGOL402
AHOH510
AHOH522
AHOH911

site_idAD6
Number of Residues7
Detailsbinding site for residue EDO A 416
ChainResidue
APRO39
AASP40
ALYS82
AEDO411
AHOH533
AHOH543
AHOH745

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO A 417
ChainResidue
AGLY273
AVAL274
APHE275
AGLU279
AEDO407
AHOH504
AHOH516
AHOH674

site_idAD8
Number of Residues4
Detailsbinding site for residue LI A 418
ChainResidue
AASP155
AGLN158
AHOH610
AHOH788

site_idAD9
Number of Residues5
Detailsbinding site for residue LI A 419
ChainResidue
AASP180
AARG183
ALEU203
APRO205
AHOH639

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11297742
ChainResidueDetails
ATHR129
AARG152
ATHR195
ALYS256

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PDB entries from 2024-07-17

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