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6T5T

Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 501
ChainResidue
AGLN159
ALEU427
RDA1
RDT3
RHOH107

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 502
ChainResidue
AHOH796
AHOH803
AHOH859
ASER220
AGLU221
ALEU223
ATHR224

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
ASER59
AGLU358
AGLU359
ATYR361
AHIS362
AHOH723

site_idAC4
Number of Residues2
Detailsbinding site for residue CL A 504
ChainResidue
ATRP299
ALYS317

site_idAC5
Number of Residues6
Detailsbinding site for residue K A 505
ChainResidue
ASER43
ASER43
ALEU44
ALEU44
AHOH729
AHOH729

site_idAC6
Number of Residues5
Detailsbinding site for residue K A 506
ChainResidue
ATHR106
AGLY107
AHOH699
AHOH854
AHOH870

site_idAC7
Number of Residues5
Detailsbinding site for residue K A 507
ChainResidue
ALEU318
ATYR323
ASER347
AHOH707
AHOH727

site_idAC8
Number of Residues6
Detailsbinding site for residue BME A 508
ChainResidue
AGLY206
ATHR207
AMET208
AMET377
ATRP379
ATYR393

site_idAC9
Number of Residues6
Detailsbinding site for residue BME A 509
ChainResidue
AILE213
ASER214
AILE401
APRO411
AILE412
AHOH771

site_idAD1
Number of Residues6
Detailsbinding site for residue BME A 510
ChainResidue
AILE216
AVAL217
ATYR225
AHOH606
AHOH664
AHOH885

site_idAD2
Number of Residues1
Detailsbinding site for residue BME A 511
ChainResidue
APHE298

site_idAD3
Number of Residues3
Detailsbinding site for residue BME A 512
ChainResidue
AGLY313
AASP369
ATYR372

site_idAD4
Number of Residues6
Detailsbinding site for residue BME A 513
ChainResidue
ALYS177
ALYS204
AGLU370
ATYR373
AHOH724
AHOH807

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:1YTU, ECO:0007744|PDB:2BGG, ECO:0007744|PDB:2W42
ChainResidueDetails
AGLN159
ALEU427

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PDB entries from 2024-07-24

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