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6QGN

Crystal structure of APT1 bound to 2-Bromopalmitate

Functional Information from GO Data
ChainGOidnamespacecontents
A0002084biological_processprotein depalmitoylation
A0004620molecular_functionphospholipase activity
A0004622molecular_functionlysophospholipase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006631biological_processfatty acid metabolic process
A0008474molecular_functionpalmitoyl-(protein) hydrolase activity
A0015908biological_processfatty acid transport
A0016298molecular_functionlipase activity
A0016787molecular_functionhydrolase activity
A0031965cellular_componentnuclear membrane
A0042997biological_processnegative regulation of Golgi to plasma membrane protein transport
A0052689molecular_functioncarboxylic ester hydrolase activity
A0070062cellular_componentextracellular exosome
A1905336biological_processnegative regulation of aggrephagy
B0002084biological_processprotein depalmitoylation
B0004620molecular_functionphospholipase activity
B0004622molecular_functionlysophospholipase activity
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005783cellular_componentendoplasmic reticulum
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006631biological_processfatty acid metabolic process
B0008474molecular_functionpalmitoyl-(protein) hydrolase activity
B0015908biological_processfatty acid transport
B0016298molecular_functionlipase activity
B0016787molecular_functionhydrolase activity
B0031965cellular_componentnuclear membrane
B0042997biological_processnegative regulation of Golgi to plasma membrane protein transport
B0052689molecular_functioncarboxylic ester hydrolase activity
B0070062cellular_componentextracellular exosome
B1905336biological_processnegative regulation of aggrephagy
C0002084biological_processprotein depalmitoylation
C0004620molecular_functionphospholipase activity
C0004622molecular_functionlysophospholipase activity
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005783cellular_componentendoplasmic reticulum
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0006631biological_processfatty acid metabolic process
C0008474molecular_functionpalmitoyl-(protein) hydrolase activity
C0015908biological_processfatty acid transport
C0016298molecular_functionlipase activity
C0016787molecular_functionhydrolase activity
C0031965cellular_componentnuclear membrane
C0042997biological_processnegative regulation of Golgi to plasma membrane protein transport
C0052689molecular_functioncarboxylic ester hydrolase activity
C0070062cellular_componentextracellular exosome
C1905336biological_processnegative regulation of aggrephagy
D0002084biological_processprotein depalmitoylation
D0004620molecular_functionphospholipase activity
D0004622molecular_functionlysophospholipase activity
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005737cellular_componentcytoplasm
D0005783cellular_componentendoplasmic reticulum
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0006631biological_processfatty acid metabolic process
D0008474molecular_functionpalmitoyl-(protein) hydrolase activity
D0015908biological_processfatty acid transport
D0016298molecular_functionlipase activity
D0016787molecular_functionhydrolase activity
D0031965cellular_componentnuclear membrane
D0042997biological_processnegative regulation of Golgi to plasma membrane protein transport
D0052689molecular_functioncarboxylic ester hydrolase activity
D0070062cellular_componentextracellular exosome
D1905336biological_processnegative regulation of aggrephagy
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue J1W A 301
ChainResidue
ALEU30
ATHR185
AHOH417
AILE75
ALEU78
ASER119
AGLN120
ATRP145
ALEU176
APHE181
ALEU184

site_idAC2
Number of Residues11
Detailsbinding site for residue J1W B 301
ChainResidue
BLEU30
BILE75
BLEU78
BSER119
BGLN120
BTRP145
BARG149
BLEU176
BPHE181
BLEU184
BHIS208

site_idAC3
Number of Residues11
Detailsbinding site for residue J1W C 301
ChainResidue
CLEU30
CILE75
CLEU78
CSER119
CGLN120
CTRP145
CPHE181
CLEU184
CTHR185
CHIS208
CHOH420

site_idAC4
Number of Residues11
Detailsbinding site for residue J1W D 301
ChainResidue
DLEU30
DILE75
DLEU78
DSER119
DGLN120
DTRP145
DARG149
DVAL177
DPHE181
DTHR185
DHIS208

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Charge relay system => ECO:0000269|PubMed:19439193, ECO:0000269|PubMed:37802024
ChainResidueDetails
ASER119
BSER119
CSER119
DSER119

site_idSWS_FT_FI2
Number of Residues8
DetailsACT_SITE: Charge relay system => ECO:0000305|PubMed:11080636
ChainResidueDetails
AASP174
AHIS208
BASP174
BHIS208
CASP174
CHIS208
DASP174
DHIS208

site_idSWS_FT_FI3
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P97823
ChainResidueDetails
ALYS224
BLYS224
CLYS224
DLYS224

222624

PDB entries from 2024-07-17

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