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6Q4T

KOD DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)acetamide)-2-dATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 801
ChainResidue
AASP404
APHE405
AASP542
AMG802
AHHZ810

site_idAC2
Number of Residues8
Detailsbinding site for residue MG A 802
ChainResidue
AHHZ810
AHOH1040
AHOH1058
PDOC12
ATYR402
AASP404
AASP542
AMN801

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 803
ChainResidue
AASP6
ATYR7
ALYS240
ALYS253

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 804
ChainResidue
AASP4
ALYS118
AGLU251
ASER340
AASP343

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 805
ChainResidue
AILE142
ATYR209
AASP215
AHOH1094

site_idAC6
Number of Residues1
Detailsbinding site for residue EDO A 806
ChainResidue
ATHR349

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 807
ChainResidue
ATYR37
AGLU111
ATYR112
AASP113
AILE114
AARG119

site_idAC8
Number of Residues2
Detailsbinding site for residue EDO A 808
ChainResidue
ATYR594
AARG606

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 809
ChainResidue
AARG746
AALA747
AGLY749
AHOH1041

site_idAD1
Number of Residues22
Detailsbinding site for residue HHZ A 810
ChainResidue
AASP404
APHE405
AARG406
ASER407
ALEU408
ATYR409
AARG460
ALYS487
AASN491
AASP542
AMN801
AMG802
AHOH938
AHOH963
AHOH970
AHOH991
AHOH1058
AHOH1077
AHOH1105
PDOC12
TDT4
TDG5

site_idAD2
Number of Residues5
Detailsbinding site for residue NO3 A 811
ChainResidue
ATHR33
APHE34
ALYS124
AHOH1010
TDC16

site_idAD3
Number of Residues4
Detailsbinding site for residue NO3 A 812
ChainResidue
ALEU396
APRO549
AALA747
APHE748

site_idAD4
Number of Residues4
Detailsbinding site for residue SO4 A 813
ChainResidue
ATYR7
APRO115
APHE116
AHOH911

site_idAD5
Number of Residues4
Detailsbinding site for residue MG T 101
ChainResidue
PHOH107
TDG8
THOH204
THOH223

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YSDTDGFFA
ChainResidueDetails
ATYR538-ALA546

218853

PDB entries from 2024-04-24

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