6Q4T
KOD DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)acetamide)-2-dATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 107.940, 146.424, 71.477 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.219 - 1.997 |
R-factor | 0.2037 |
Rwork | 0.202 |
R-free | 0.23110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5omf |
RMSD bond length | 0.004 |
RMSD bond angle | 0.701 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_3283: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.808 | 2.007 |
High resolution limit [Å] | 1.997 | 1.997 |
Rmeas | 0.189 | 2.542 |
Number of reflections | 138630 | 16466 |
<I/σ(I)> | 5.6 | 0.35 |
Completeness [%] | 93.3 | 68.5 |
Redundancy | 3.38 | 2.43 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 0.09M sodium nitrate, 0.09 sodium phosphate dibasic, 0.09M ammonium sulfate, 0.1 M Tris base, 0.1 M BICINE, 12.5 % MPD, 12.5 % PEG 1000, 12.5 % PEG 3350 |