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6PWK

Vibrio cholerae LapD S helix-GGDEF-EAL (bound to c-di-GMP)

Functional Information from GO Data
ChainGOidnamespacecontents
A0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
B0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue C2E A 701
ChainResidue
AARG423
AASP469
AASN492
AALA494
AASP554
AARG611
AVAL612
AGLU613
AGLY631
APHE632
AMG703
AGLN425
AHOH803
AHOH808
AGLU438
APHE440
ASER441
AALA452
AASN453
ALEU456
APHE468

site_idAC2
Number of Residues12
Detailsbinding site for residue C2E A 702
ChainResidue
AARG248
AGLU316
ATHR369
ALEU372
ASER373
AASP376
AGLY403
ALYS404
AGLN405
AHOH814
BTYR284
BASP288

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 703
ChainResidue
AGLU438
AASN492
AGLU524
AASP554
AC2E701

site_idAC4
Number of Residues22
Detailsbinding site for residue C2E B 701
ChainResidue
BARG423
BGLN425
BGLU438
BPHE440
BSER441
BALA452
BASN453
BLEU456
BPHE468
BASP469
BASN492
BALA494
BASP554
BARG611
BVAL612
BGLU613
BGLY631
BPHE632
BMG703
BHOH804
BHOH808
BHOH812

site_idAC5
Number of Residues13
Detailsbinding site for residue C2E B 702
ChainResidue
ATYR284
AASP288
BARG248
BILE269
BGLU316
BTHR369
BLEU372
BSER373
BASP376
BGLY403
BLYS404
BGLN405
BHOH809

site_idAC6
Number of Residues6
Detailsbinding site for residue MG B 703
ChainResidue
BGLU438
BASN492
BGLU524
BASP554
BC2E701
BHOH804

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PDB entries from 2025-02-05

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