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6PGL

Structure of Kluyveromyces marxianus Usb1 with uridine monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004518molecular_functionnuclease activity
A0034477biological_processU6 snRNA 3'-end processing
B0004518molecular_functionnuclease activity
B0034477biological_processU6 snRNA 3'-end processing
C0004518molecular_functionnuclease activity
C0034477biological_processU6 snRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue GOL A 301
ChainResidue
APRO104
AARG107
AHOH494
AHOH532

site_idAC2
Number of Residues17
Detailsbinding site for residue U5P A 302
ChainResidue
AASN209
AHIS211
ASER213
AHOH424
AHOH438
AHOH454
AHOH460
AHOH480
AHOH488
AHOH497
AHOH501
AHOH516
AHIS117
ASER119
ATYR162
AGLU163
AASN164

site_idAC3
Number of Residues2
Detailsbinding site for residue PGE A 303
ChainResidue
APHE68
AHIS117

site_idAC4
Number of Residues6
Detailsbinding site for residue PGE A 304
ChainResidue
ALEU222
AGLN223
AHOH410
AHOH430
BTYR162
BASN208

site_idAC5
Number of Residues4
Detailsbinding site for residue PGE A 305
ChainResidue
ALEU155
AARG252
AGLN256
BGLN81

site_idAC6
Number of Residues15
Detailsbinding site for residue U5P B 301
ChainResidue
BHIS117
BSER119
BTYR162
BGLU163
BASN164
BASN209
BHIS211
BSER213
BHOH402
BHOH421
BHOH428
BHOH444
BHOH445
BHOH461
BHOH464

site_idAC7
Number of Residues10
Detailsbinding site for residue PGE B 302
ChainResidue
AMET58
ALYS78
BGLU72
BARG74
BASP76
BGLN79
BGLN256
BPHE257
BARG258
BCYS259

site_idAC8
Number of Residues1
Detailsbinding site for residue EDO B 303
ChainResidue
BTYR221

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO B 304
ChainResidue
BPHE68
BLYS265
BHOH401

site_idAD1
Number of Residues1
Detailsbinding site for residue EDO B 305
ChainResidue
BTHR96

site_idAD2
Number of Residues5
Detailsbinding site for residue PG6 B 306
ChainResidue
BLEU222
BGLN223
BGLN224
CTYR162
CASN208

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL C 301
ChainResidue
CASP76
CALA253
CASN254
CGLN256

site_idAD4
Number of Residues16
Detailsbinding site for residue U5P C 302
ChainResidue
CHIS117
CSER119
CTYR162
CGLU163
CASN164
CASN209
CHIS211
CSER213
CHOH403
CHOH409
CHOH412
CHOH423
CHOH429
CHOH439
CHOH443
CHOH476

site_idAD5
Number of Residues3
Detailsbinding site for residue PGE C 303
ChainResidue
CPHE68
CPHE70
CHIS117

site_idAD6
Number of Residues2
Detailsbinding site for residue EDO C 304
ChainResidue
CSER189
CGLU192

site_idAD7
Number of Residues3
Detailsbinding site for residue EDO C 305
ChainResidue
CTYR221
CGLN224
CHOH401

site_idAD8
Number of Residues2
Detailsbinding site for residue EDO C 306
ChainResidue
CASP76
CSER77

site_idAD9
Number of Residues5
Detailsbinding site for residue PG4 C 307
ChainResidue
AHOH516
CLEU222
CGLN223
CGLN224
ATYR162

site_idAE1
Number of Residues5
Detailsbinding site for residue PG6 C 308
ChainResidue
ALYS88
AGLU133
AGLY137
CGLN81
CLEU250

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PDB entries from 2025-12-17

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