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6PC1

Crystal structure of Helicobacter pylori PPX/GppA (E143A) in complex with ppGpp

Functional Information from GO Data
ChainGOidnamespacecontents
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0016462molecular_functionpyrophosphatase activity
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
C0016462molecular_functionpyrophosphatase activity
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
D0016462molecular_functionpyrophosphatase activity
D0016787molecular_functionhydrolase activity
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue G4P A 601
ChainResidue
AARG16
AHOH703
AHOH735
AHOH744
AHOH751
AHOH752
AHOH768
BTYR369
BLYS404
ALYS35
AARG205
ALYS209
ALEU222
AASN253
AARG256
AGLY283
AHOH701

site_idAC2
Number of Residues11
Detailsbinding site for residue PO4 A 602
ChainResidue
ASER12
ATHR83
ASER84
AGLU115
AGLY138
AGLY139
AGLY140
ASER141
AHOH726
AHOH763
AHOH767

site_idAC3
Number of Residues10
Detailsbinding site for residue LMR A 603
ChainResidue
AASN13
ASER14
AARG16
AGLY202
AARG205
AARG256
AARG287
AHOH709
AHOH716
AHOH759

site_idAC4
Number of Residues2
Detailsbinding site for residue LMR A 604
ChainResidue
ALYS467
BLYS151

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 605
ChainResidue
AASP346
APRO420
ASER421
ATHR424
AHOH707

site_idAC6
Number of Residues7
Detailsbinding site for residue MG B 501
ChainResidue
BPO4503
BHOH625
BHOH628
BHOH658
BHOH670
BHOH671
BHOH689

site_idAC7
Number of Residues14
Detailsbinding site for residue G4P B 502
ChainResidue
ATYR369
ALEU370
ALYS404
BARG16
BLYS35
BARG205
BLYS209
BLEU222
BASN253
BARG256
BGLY283
BHOH640
BHOH648
BHOH663

site_idAC8
Number of Residues12
Detailsbinding site for residue PO4 B 503
ChainResidue
BSER12
BTHR83
BSER84
BGLU115
BGLY138
BGLY139
BGLY140
BSER141
BMG501
BHOH658
BHOH670
BHOH671

site_idAC9
Number of Residues13
Detailsbinding site for residue LMR B 504
ChainResidue
BASN13
BSER14
BARG16
BGLY201
BGLY202
BARG205
BARG256
BARG287
BHOH612
BHOH620
BHOH628
BHOH644
BHOH677

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO B 505
ChainResidue
BLYS373
BHOH684

site_idAD2
Number of Residues6
Detailsbinding site for residue MG C 501
ChainResidue
CPO4503
CHOH604
CHOH638
CHOH640
CHOH673
CHOH698

site_idAD3
Number of Residues17
Detailsbinding site for residue G4P C 502
ChainResidue
CARG16
CLYS35
CARG205
CLYS209
CLEU222
CASN253
CARG256
CGLY283
CMG505
CHOH609
CHOH612
CHOH642
CHOH651
CHOH666
DTYR369
DLEU370
DLYS404

site_idAD4
Number of Residues13
Detailsbinding site for residue PO4 C 503
ChainResidue
CGLY11
CSER12
CTHR83
CSER84
CGLU115
CGLY138
CGLY139
CGLY140
CSER141
CMG501
CHOH604
CHOH638
CHOH643

site_idAD5
Number of Residues13
Detailsbinding site for residue LMR C 504
ChainResidue
CASN13
CSER14
CARG16
CGLY201
CGLY202
CARG205
CARG256
CARG287
CHOH618
CHOH638
CHOH640
CHOH654
CHOH690

site_idAD6
Number of Residues3
Detailsbinding site for residue MG C 505
ChainResidue
CG4P502
CHOH695
DHOH735

site_idAD7
Number of Residues2
Detailsbinding site for residue PO4 C 506
ChainResidue
CLYS177
CLYS180

site_idAD8
Number of Residues14
Detailsbinding site for residue G4P D 601
ChainResidue
CTYR369
CLEU370
CLYS404
DARG16
DLYS35
DARG205
DLYS209
DLEU222
DASN253
DARG256
DGLY283
DHOH704
DHOH738
DHOH748

site_idAD9
Number of Residues8
Detailsbinding site for residue PO4 D 602
ChainResidue
DSER12
DTHR83
DSER84
DGLU115
DGLY138
DGLY139
DGLY140
DSER141

site_idAE1
Number of Residues6
Detailsbinding site for residue LMR D 603
ChainResidue
DASN13
DARG16
DGLY202
DARG205
DARG287
DHOH707

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PDB entries from 2024-09-11

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