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6OZM

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 10 min soak in 10 mM Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue GOL A 301
ChainResidue
AASP32
AARG38
AHOH442
BLEU145

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 302
ChainResidue
ATYR79
AGLU80
ALYS114
AGLU115

site_idAC3
Number of Residues5
Detailsbinding site for residue PGE A 303
ChainResidue
AHIS225
AHIS226
ACYS228
AARG229
AGLU12

site_idAC4
Number of Residues1
Detailsbinding site for residue EDO A 304
ChainResidue
AHIS202

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 305
ChainResidue
AGLU106
AGLU113
AGLY162
ASER188
AHOH475

site_idAC6
Number of Residues4
Detailsbinding site for residue PGE B 301
ChainResidue
BPRO73
BHIS225
BHIS226
BCYS228

site_idAC7
Number of Residues6
Detailsbinding site for residue MN C 101
ChainResidue
AASP52
AASP240
AHOH429
CU12
CHOH205
CHOH212

site_idAC8
Number of Residues6
Detailsbinding site for residue MN C 102
ChainResidue
AASP52
AASP126
AHOH408
AHOH422
CA11
CU12

site_idAC9
Number of Residues7
Detailsbinding site for residue MN C 103
ChainResidue
CU12
CA13
CHOH205
CHOH207
CHOH208
CHOH211
CHOH216

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO C 104
ChainResidue
CA17
CU18

site_idAD2
Number of Residues6
Detailsbinding site for residue MN D 101
ChainResidue
BASP52
BASP240
BHOH446
DU12
DHOH201
DHOH205

site_idAD3
Number of Residues6
Detailsbinding site for residue MN D 102
ChainResidue
BASP52
BASP126
BHOH408
BHOH416
DA11
DU12

site_idAD4
Number of Residues4
Detailsbinding site for residue GOL D 103
ChainResidue
DU18
DG19
DC20
DHOH206

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

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PDB entries from 2024-07-24

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