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6OZG

Crystal structure of Thermotoga maritima (Tm) Endonuclease V (E89Q) in complex with a 12mer DNA containing an inosine followed by a ribo-adenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003727molecular_functionsingle-stranded RNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0016787molecular_functionhydrolase activity
A0016891molecular_functionRNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism
A0043737molecular_functiondeoxyribonuclease V activity
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003727molecular_functionsingle-stranded RNA binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0016787molecular_functionhydrolase activity
B0016891molecular_functionRNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism
B0043737molecular_functiondeoxyribonuclease V activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 301
ChainResidue
AASP43
AASP110
AHIS214
CDG7

site_idAC2
Number of Residues3
Detailsbinding site for residue MG B 301
ChainResidue
BASP43
BHIS214
DDG7

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL B 302
ChainResidue
BLYS95
BGLU98
BLYS99
AASP10
BGLU72

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO B 303
ChainResidue
BARG204
BARG205
BILE206
BARG211
CHOH207

site_idAC5
Number of Residues6
Detailsbinding site for residue MG C 101
ChainResidue
CDG7
CHOH201
CHOH203
CHOH205
CHOH206
CHOH208

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO C 102
ChainResidue
BLYS173
CDG4
CHOH207

site_idAC7
Number of Residues4
Detailsbinding site for residue EDO C 103
ChainResidue
AILE17
AARG118
BGLY203
CDG4

site_idAC8
Number of Residues6
Detailsbinding site for residue GOL D 101
ChainResidue
BSER140
DDT3
DDA5
DA6
DDG7
DDA8

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsRegion: {"description":"Interaction with target DNA"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Interaction with target DNA"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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