6O0J
M.tb MenD with ThDP and Inhibitor bound
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0005886 | cellular_component | plasma membrane |
A | 0009234 | biological_process | menaquinone biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0009234 | biological_process | menaquinone biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0009234 | biological_process | menaquinone biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0030976 | molecular_function | thiamine pyrophosphate binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0005886 | cellular_component | plasma membrane |
D | 0009234 | biological_process | menaquinone biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0030976 | molecular_function | thiamine pyrophosphate binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | binding site for residue DNA A 601 |
Chain | Residue |
A | TYR95 |
D | GLY115 |
A | ARG97 |
A | ARG277 |
A | ARG303 |
A | TRP304 |
A | PRO305 |
A | HOH703 |
A | HOH739 |
A | HOH753 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue GOL A 602 |
Chain | Residue |
A | LEU123 |
A | HOH794 |
B | LEU123 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue GOL A 603 |
Chain | Residue |
A | GLU110 |
A | LEU138 |
A | HOH776 |
B | GLU110 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue ACT A 604 |
Chain | Residue |
A | GLU140 |
A | ALA142 |
A | THR146 |
A | TRP153 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue FMT A 605 |
Chain | Residue |
A | SER29 |
A | ARG30 |
A | THR78 |
A | GLN118 |
D | TPP604 |
site_id | AC6 |
Number of Residues | 10 |
Details | binding site for residue DNA D 601 |
Chain | Residue |
A | GLY113 |
A | GLY115 |
D | TYR95 |
D | ARG97 |
D | ARG303 |
D | TRP304 |
D | PRO305 |
D | HOH704 |
D | HOH754 |
D | HOH766 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue MG D 602 |
Chain | Residue |
D | ASP440 |
D | ASP469 |
D | GLY471 |
D | TPP604 |
D | HOH717 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue ACT D 603 |
Chain | Residue |
A | ASN117 |
A | GLN118 |
D | ALA376 |
D | SER377 |
D | ARG381 |
D | ARG399 |
D | ALA402 |
site_id | AC9 |
Number of Residues | 24 |
Details | binding site for residue TPP D 604 |
Chain | Residue |
A | PRO27 |
A | GLU55 |
A | THR81 |
A | GLN118 |
A | FMT605 |
D | SER377 |
D | ASN378 |
D | PRO379 |
D | ALA402 |
D | GLY403 |
D | ILE404 |
D | ASP405 |
D | GLY439 |
D | ASP440 |
D | LEU441 |
D | THR442 |
D | ASP469 |
D | GLY471 |
D | GLY472 |
D | GLY473 |
D | ILE474 |
D | MG602 |
D | HOH717 |
D | HOH763 |
site_id | AD1 |
Number of Residues | 1 |
Details | binding site for residue FMT D 605 |
Chain | Residue |
D | ARG396 |
site_id | AD2 |
Number of Residues | 9 |
Details | binding site for residue DNA B 601 |
Chain | Residue |
B | TYR95 |
B | ARG97 |
B | ARG277 |
B | ARG303 |
B | TRP304 |
B | PRO305 |
B | HOH703 |
B | HOH730 |
C | GLY115 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue FMT B 602 |
Chain | Residue |
B | GLU140 |
B | THR146 |
B | LEU149 |
B | TRP153 |
site_id | AD4 |
Number of Residues | 8 |
Details | binding site for residue DNA C 601 |
Chain | Residue |
B | GLY115 |
C | TYR95 |
C | ARG97 |
C | ARG303 |
C | TRP304 |
C | PRO305 |
C | HOH723 |
C | HOH734 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue MG C 602 |
Chain | Residue |
C | ASP440 |
C | ASP469 |
C | GLY471 |
C | TPP604 |
C | HOH704 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue ACT C 603 |
Chain | Residue |
B | ASN117 |
C | ALA376 |
C | SER377 |
C | ARG381 |
C | ARG399 |
C | ALA402 |
site_id | AD7 |
Number of Residues | 23 |
Details | binding site for residue TPP C 604 |
Chain | Residue |
B | PRO27 |
B | GLU55 |
B | THR81 |
B | GLN118 |
C | SER377 |
C | ASN378 |
C | PRO379 |
C | ALA402 |
C | GLY403 |
C | ILE404 |
C | ASP405 |
C | GLY439 |
C | ASP440 |
C | LEU441 |
C | THR442 |
C | ASP469 |
C | GLY471 |
C | GLY472 |
C | GLY473 |
C | ILE474 |
C | MG602 |
C | HOH704 |
C | HOH757 |