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Crystal structure of N-myristoyl transferase (NMT) G386E mutant from Plasmodium vivax in complex with inhibitor IMP-1002

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues37
Detailsbinding site for residue YNC A 501
ChainResidue
ATYR28
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ALYS29
ATHR183
ATRP192
AGLN193
AALA194
ATHR197
ALEU202
ATYR393
AHOH637
AHOH657
AHOH687
APHE30
AHOH691
AHOH755
AHOH814
AHOH836
AHOH844
AHOH851
AHOH929
AHOH1007
ATRP31
AASN94
ATYR95
AVAL96
AASN161
APHE162

site_idAC2
Number of Residues15
Detailsbinding site for residue JCY A 502
ChainResidue
AVAL96
APHE103
APHE105
ATYR107
AASN161
ATHR197
AGLY199
ATYR211
ASER319
ATYR334
AASN365
AALA366
ALEU367
ALEU409
ALEU410

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 503
ChainResidue
AASN120
ALYS257
ALYS259
AHOH642
AHOH648
AHOH711
AHOH781

site_idAC4
Number of Residues5
Detailsbinding site for residue CL A 504
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358
AHOH695

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 B 501
ChainResidue
AARG210
ALYS373
BARG210
BLYS373

site_idAC6
Number of Residues38
Detailsbinding site for residue YNC B 502
ChainResidue
BHOH725
BHOH745
BHOH781
BHOH799
BHOH837
BHOH912
BHOH934
BTYR28
BLYS29
BPHE30
BTRP31
BTYR95
BVAL96
BASN161
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BILE186
BTRP192
BGLN193
BALA194
BTYR196
BTHR197
BLEU202
BTYR393
BHOH625
BHOH659
BHOH695
BHOH710

site_idAC7
Number of Residues17
Detailsbinding site for residue JCY B 503
ChainResidue
BVAL96
BPHE103
BPHE105
BTYR107
BASN161
BTHR197
BGLY199
BTYR211
BHIS213
BSER319
BTYR334
BASN365
BALA366
BLEU367
BLEU409
BLEU410
BHOH654

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO B 504
ChainResidue
BGLU159
BPHE281
BTYR337
BVAL408
BHOH666

site_idAC9
Number of Residues5
Detailsbinding site for residue CL B 505
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358
BHOH673

site_idAD1
Number of Residues37
Detailsbinding site for residue YNC C 501
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CASN94
CTYR95
CVAL96
CASN161
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CTRP192
CGLN193
CTHR197
CLEU202
CTYR393
CHOH627
CHOH695
CHOH750
CHOH764
CHOH774
CHOH789
CHOH799
CHOH814
CHOH822
CHOH941
CHOH978

site_idAD2
Number of Residues15
Detailsbinding site for residue JCY C 502
ChainResidue
CVAL96
CPHE103
CPHE105
CTYR107
CASN161
CTHR197
CGLY199
CTYR211
CSER319
CTYR334
CASN365
CALA366
CLEU367
CLEU409
CLEU410

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO C 503
ChainResidue
CGLU159
CPHE281
CPHE336
CTYR337
CVAL408
CHOH642

site_idAD4
Number of Residues5
Detailsbinding site for residue CL C 504
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358
CHOH682

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

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PDB entries from 2024-07-17

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