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6M0X

Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0016787molecular_functionhydrolase activity
A0043571biological_processmaintenance of CRISPR repeat elements
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue BA A 1201
ChainResidue
AGLY421
CDT17
CHOH204

site_idAC2
Number of Residues1
Detailsbinding site for residue BA A 1202
ChainResidue
ALYS848

site_idAC3
Number of Residues1
Detailsbinding site for residue BA A 1203
ChainResidue
ATHR514

site_idAC4
Number of Residues4
Detailsbinding site for residue BA A 1204
ChainResidue
AASP824
ASER961
AHOH1316
DHOH201

site_idAC5
Number of Residues2
Detailsbinding site for residue BA A 1205
ChainResidue
AASP168
AHOH1301

site_idAC6
Number of Residues3
Detailsbinding site for residue BA A 1206
ChainResidue
ALYS357
ALEU359
AASP363

site_idAC7
Number of Residues6
Detailsbinding site for residue MG A 1207
ChainResidue
AASP598
AASN622
AHOH1309
AHOH1312
CDC11
CDC12

site_idAC8
Number of Residues4
Detailsbinding site for residue MG A 1208
ChainResidue
AASP398
ASER1082
AGLY1083
AHOH1322

site_idAC9
Number of Residues3
Detailsbinding site for residue BA B 101
ChainResidue
BU50
BG53
BHOH213

site_idAD1
Number of Residues3
Detailsbinding site for residue BA B 102
ChainResidue
BG40
BHOH208
BHOH221

site_idAD2
Number of Residues1
Detailsbinding site for residue BA B 103
ChainResidue
BU2

site_idAD3
Number of Residues1
Detailsbinding site for residue BA B 104
ChainResidue
AHOH1320

site_idAD4
Number of Residues1
Detailsbinding site for residue BA B 105
ChainResidue
BG33

site_idAD5
Number of Residues1
Detailsbinding site for residue BA B 106
ChainResidue
BHOH222

site_idAD6
Number of Residues1
Detailsbinding site for residue BA C 101
ChainResidue
CDG1

site_idAD7
Number of Residues2
Detailsbinding site for residue BA D 101
ChainResidue
CHOH201
DHOH203

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000255|HAMAP-Rule:MF_01480
ChainResidueDetails
AASP9

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000255|HAMAP-Rule:MF_01480
ChainResidueDetails
AALA599

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01480
ChainResidueDetails
AASP9
AGLU509
AGLU513
AHIS738

237735

PDB entries from 2025-06-18

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