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6LWB

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing 5-hydroxyuracil (5-OHU)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003684molecular_functiondamaged DNA binding
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0006284biological_processbase-excision repair
A0008270molecular_functionzinc ion binding
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
A0019104molecular_functionDNA N-glycosylase activity
D0003676molecular_functionnucleic acid binding
D0003684molecular_functiondamaged DNA binding
D0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
D0006284biological_processbase-excision repair
D0008270molecular_functionzinc ion binding
D0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
D0019104molecular_functionDNA N-glycosylase activity
G0003676molecular_functionnucleic acid binding
G0003684molecular_functiondamaged DNA binding
G0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
G0006284biological_processbase-excision repair
G0008270molecular_functionzinc ion binding
G0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
G0019104molecular_functionDNA N-glycosylase activity
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000305
ChainResidueDetails
AGLY2
DGLY2
GGLY2

site_idSWS_FT_FI2
Number of Residues3
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
AGLN3
DGLN3
GGLN3

site_idSWS_FT_FI3
Number of Residues3
DetailsACT_SITE: Proton donor; for beta-elimination activity => ECO:0000305
ChainResidueDetails
ALYS54
DLYS54
GLYS54

site_idSWS_FT_FI4
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASN176
DASN176
GASN176

227111

PDB entries from 2024-11-06

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