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6L3R

Crystal structure of Ribonucleotide reductase R1 subunit, RRM1 in complex with 4-bromo-N-((1S,2R)-2-(naphthalen-1-yl)-1-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)propyl)benzenesulfonamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004748molecular_functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
A0005524molecular_functionATP binding
A0009263biological_processdeoxyribonucleotide biosynthetic process
E0004748molecular_functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
E0005524molecular_functionATP binding
E0009263biological_processdeoxyribonucleotide biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue TTP A 801
ChainResidue
AASP226
AHOH921
AHOH928
ELYS243
ETYR285
EVAL286
EASP287
ASER227
AILE228
AARG256
AILE262
AALA263
AGLY264
ASER269
AMG802

site_idAC2
Number of Residues2
Detailsbinding site for residue MG A 802
ChainResidue
ATTP801
AHOH928

site_idAC3
Number of Residues10
Detailsbinding site for residue E4X A 803
ChainResidue
AGLU685
AILE686
ASER687
AGLN688
ALYS689
AILE712
ALYS719
ASER722
AMET723
AHOH934

site_idAC4
Number of Residues7
Detailsbinding site for residue ACT A 804
ChainResidue
ATHR199
ASER448
ATHR604
ATHR607
AHOH987
AHOH992
AHOH1015

site_idAC5
Number of Residues3
Detailsbinding site for residue ACT A 805
ChainResidue
ATHR576
AASP577
EVAL383

site_idAC6
Number of Residues2
Detailsbinding site for residue MG E 801
ChainResidue
ETTP803
EHOH940

site_idAC7
Number of Residues9
Detailsbinding site for residue E4X E 802
ChainResidue
EGLU685
EILE686
ESER687
EGLN688
ELYS689
EILE712
ELYS719
ESER722
EMET723

site_idAC8
Number of Residues16
Detailsbinding site for residue TTP E 803
ChainResidue
ALYS243
AVAL286
AASP287
EASP226
ESER227
EILE228
EILE231
EARG256
EILE262
EALA263
EGLY264
ETHR265
ESER269
EMG801
EHOH939
EHOH940

site_idAC9
Number of Residues6
Detailsbinding site for residue ACT E 804
ChainResidue
ETHR199
ESER448
ETHR607
EHOH914
EHOH960
EHOH963

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 E 805
ChainResidue
ESER202
ESER606
EHOH914
EHOH960
EHOH982

Functional Information from PROSITE/UniProt
site_idPS00089
Number of Residues23
DetailsRIBORED_LARGE Ribonucleotide reductase large subunit signature. WkvLkekiakyGIRNsllIApmP
ChainResidueDetails
ATRP581-PRO603

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Cysteine radical intermediate","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"PDB","id":"3HND","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PDB","id":"3HNE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsSite: {"description":"Important for hydrogen atom transfer","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsSite: {"description":"Important for electron transfer","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

250835

PDB entries from 2026-03-18

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