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6IS0

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0016422molecular_functionmRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
A0099122molecular_functionRNA polymerase II C-terminal domain binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue SAH A 701
ChainResidue
ASER497
ACYS529
ASER530
APRO544
APHE545
AGLU556
AASN558
APRO560
AEDO706
AHOH809
AHOH846
ALEU498
AHOH918
AHOH1030
APHE503
AGLU515
ACYS516
APHE517
AALA518
ASER519
AASN522

site_idAC2
Number of Residues12
Detailsbinding site for residue M7G A 702
ChainResidue
AARG239
AARG269
AGLU563
ATRP593
AASP595
APRO596
APRO597
ATHR598
AHOH839
AHOH877
AHOH926
AHOH953

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 703
ChainResidue
AHIS198
ALEU251
APRO253
AHOH841
AHOH891
AHOH917

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 704
ChainResidue
ALEU241
ALYS245
APRO253
ALEU254
AALA531
APHE532
AHOH809
AHOH909

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 705
ChainResidue
APRO201
AHIS202
APRO203
APRO419
APRO420
ALYS468
ASER471
AHOH939

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 706
ChainResidue
AASN558
APRO559
APRO560
APHE561
ASAH701
AHOH820
AHOH836

site_idAC7
Number of Residues15
Detailsbinding site for residue B3P A 707
ChainResidue
AGLU192
AARG193
AALA194
APRO195
AGLU401
AVAL402
AGLN403
AASP404
AARG405
ATYR410
APRO501
AGLU504
AGLU620
AHOH827
AHOH857

site_idAC8
Number of Residues20
Detailsbinding site for residues M7G C 1 and A2M C 2
ChainResidue
AVAL178
ATYR179
AARG191
ALYS285
ASER334
ALYS335
AGLU374
AARG377
AARG378
AASP404
AARG405
ALEU406
AASP431
AARG446
AVAL500
AGLU622
ATYR623
AARG624
CG3
CHOH101

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:30467178, ECO:0007744|PDB:6IRZ, ECO:0007744|PDB:6IS0
ChainResidueDetails
AARG239
AARG269
AGLU563
ATRP593

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:30467178, ECO:0007744|PDB:6IRY, ECO:0007744|PDB:6IRZ, ECO:0007744|PDB:6IS0
ChainResidueDetails
AASN558
APHE619

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PDB entries from 2024-07-24

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