6HQA

Molecular structure of promoter-bound yeast TFIID

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000976	molecular_function	transcription cis-regulatory region binding
A	0003682	molecular_function	chromatin binding
A	0005634	cellular_component	nucleus
A	0005669	cellular_component	transcription factor TFIID complex
A	0006351	biological_process	DNA-templated transcription
A	0006366	biological_process	transcription by RNA polymerase II
A	0006367	biological_process	transcription initiation at RNA polymerase II promoter
A	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
A	0019865	molecular_function	immunoglobulin binding
B	0000124	cellular_component	SAGA complex
B	0003682	molecular_function	chromatin binding
B	0005634	cellular_component	nucleus
B	0005669	cellular_component	transcription factor TFIID complex
B	0006325	biological_process	chromatin organization
B	0006351	biological_process	DNA-templated transcription
B	0006357	biological_process	regulation of transcription by RNA polymerase II
B	0006366	biological_process	transcription by RNA polymerase II
B	0006367	biological_process	transcription initiation at RNA polymerase II promoter
B	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
B	0042802	molecular_function	identical protein binding
B	0043130	molecular_function	ubiquitin binding
B	0045944	biological_process	positive regulation of transcription by RNA polymerase II
B	0046695	cellular_component	SLIK (SAGA-like) complex
B	0060090	molecular_function	molecular adaptor activity
C	0000124	cellular_component	SAGA complex
C	0003682	molecular_function	chromatin binding
C	0005634	cellular_component	nucleus
C	0005669	cellular_component	transcription factor TFIID complex
C	0006325	biological_process	chromatin organization
C	0006351	biological_process	DNA-templated transcription
C	0006357	biological_process	regulation of transcription by RNA polymerase II
C	0006366	biological_process	transcription by RNA polymerase II
C	0006367	biological_process	transcription initiation at RNA polymerase II promoter
C	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
C	0042802	molecular_function	identical protein binding
C	0043130	molecular_function	ubiquitin binding
C	0045944	biological_process	positive regulation of transcription by RNA polymerase II
C	0046695	cellular_component	SLIK (SAGA-like) complex
C	0060090	molecular_function	molecular adaptor activity
D	0000124	cellular_component	SAGA complex
D	0003682	molecular_function	chromatin binding
D	0003713	molecular_function	transcription coactivator activity
D	0005634	cellular_component	nucleus
D	0005669	cellular_component	transcription factor TFIID complex
D	0005829	cellular_component	cytosol
D	0006325	biological_process	chromatin organization
D	0006351	biological_process	DNA-templated transcription
D	0006357	biological_process	regulation of transcription by RNA polymerase II
D	0006366	biological_process	transcription by RNA polymerase II
D	0006367	biological_process	transcription initiation at RNA polymerase II promoter
D	0010468	biological_process	regulation of gene expression
D	0010557	biological_process	positive regulation of macromolecule biosynthetic process
D	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
D	0042802	molecular_function	identical protein binding
D	0045944	biological_process	positive regulation of transcription by RNA polymerase II
D	0046695	cellular_component	SLIK (SAGA-like) complex
D	0046982	molecular_function	protein heterodimerization activity
D	0051123	biological_process	RNA polymerase II preinitiation complex assembly
D	0060090	molecular_function	molecular adaptor activity
D	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
D	2000144	biological_process	positive regulation of DNA-templated transcription initiation
E	0000124	cellular_component	SAGA complex
E	0003682	molecular_function	chromatin binding
E	0003713	molecular_function	transcription coactivator activity
E	0005634	cellular_component	nucleus
E	0005669	cellular_component	transcription factor TFIID complex
E	0005829	cellular_component	cytosol
E	0006325	biological_process	chromatin organization
E	0006351	biological_process	DNA-templated transcription
E	0006357	biological_process	regulation of transcription by RNA polymerase II
E	0006366	biological_process	transcription by RNA polymerase II
E	0006367	biological_process	transcription initiation at RNA polymerase II promoter
E	0010468	biological_process	regulation of gene expression
E	0010557	biological_process	positive regulation of macromolecule biosynthetic process
E	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
E	0042802	molecular_function	identical protein binding
E	0045944	biological_process	positive regulation of transcription by RNA polymerase II
E	0046695	cellular_component	SLIK (SAGA-like) complex
E	0046982	molecular_function	protein heterodimerization activity
E	0051123	biological_process	RNA polymerase II preinitiation complex assembly
E	0060090	molecular_function	molecular adaptor activity
E	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
E	2000144	biological_process	positive regulation of DNA-templated transcription initiation
F	0000124	cellular_component	SAGA complex
F	0003682	molecular_function	chromatin binding
F	0003713	molecular_function	transcription coactivator activity
F	0005634	cellular_component	nucleus
F	0005669	cellular_component	transcription factor TFIID complex
F	0006325	biological_process	chromatin organization
F	0006351	biological_process	DNA-templated transcription
F	0006352	biological_process	DNA-templated transcription initiation
F	0006357	biological_process	regulation of transcription by RNA polymerase II
F	0006366	biological_process	transcription by RNA polymerase II
F	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
F	0042802	molecular_function	identical protein binding
F	0045944	biological_process	positive regulation of transcription by RNA polymerase II
F	0046695	cellular_component	SLIK (SAGA-like) complex
F	0046982	molecular_function	protein heterodimerization activity
F	0051123	biological_process	RNA polymerase II preinitiation complex assembly
F	0060090	molecular_function	molecular adaptor activity
J	0003677	molecular_function	DNA binding
J	0005634	cellular_component	nucleus
J	0005669	cellular_component	transcription factor TFIID complex
J	0006351	biological_process	DNA-templated transcription
J	0006352	biological_process	DNA-templated transcription initiation
J	0006366	biological_process	transcription by RNA polymerase II
J	0006367	biological_process	transcription initiation at RNA polymerase II promoter
J	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
J	0046982	molecular_function	protein heterodimerization activity
K	0000124	cellular_component	SAGA complex
K	0003677	molecular_function	DNA binding
K	0005634	cellular_component	nucleus
K	0005669	cellular_component	transcription factor TFIID complex
K	0006351	biological_process	DNA-templated transcription
K	0006352	biological_process	DNA-templated transcription initiation
K	0017025	molecular_function	TBP-class protein binding
K	0046982	molecular_function	protein heterodimerization activity
K	0051123	biological_process	RNA polymerase II preinitiation complex assembly
K	0070461	cellular_component	SAGA-type complex
K	1905368	cellular_component	peptidase complex

Functional Information from PROSITE/UniProt

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. LFTGssDkTARMWDI

Chain	Residue	Details
B	LEU552-ILE566
B	LEU594-ILE608
B	LEU637-VAL651

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