6H8K

Crystal structure of a variant (Q133C in PSST) of Yarrowia lipolytica complex I

これは巨大構造です。
?

GO(遺伝子オントロジー)由来の情報

鎖名GO(遺伝子オントロジー)id名前空間内容
10016021cellular_componentintegral component of membrane
10005747cellular_componentmitochondrial respiratory chain complex I
10009060biological_processaerobic respiration
20016021cellular_componentintegral component of membrane
20005743cellular_componentmitochondrial inner membrane
20070469cellular_componentrespiratory chain
20055114biological_processoxidation-reduction process
30016021cellular_componentintegral component of membrane
30005747cellular_componentmitochondrial respiratory chain complex I
30030964cellular_componentNADH dehydrogenase complex
30008137molecular_functionNADH dehydrogenase (ubiquinone) activity
L0016021cellular_componentintegral component of membrane
L0005747cellular_componentmitochondrial respiratory chain complex I
L0030964cellular_componentNADH dehydrogenase complex
L0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
L0042773biological_processATP synthesis coupled electron transport
40016021cellular_componentintegral component of membrane
40005747cellular_componentmitochondrial respiratory chain complex I
40008137molecular_functionNADH dehydrogenase (ubiquinone) activity
40048039molecular_functionubiquinone binding
40009060biological_processaerobic respiration
40042773biological_processATP synthesis coupled electron transport
40015990biological_processelectron transport coupled proton transport
50016021cellular_componentintegral component of membrane
50005743cellular_componentmitochondrial inner membrane
50070469cellular_componentrespiratory chain
50008137molecular_functionNADH dehydrogenase (ubiquinone) activity
50042773biological_processATP synthesis coupled electron transport
60016021cellular_componentintegral component of membrane
60005747cellular_componentmitochondrial respiratory chain complex I
60008137molecular_functionNADH dehydrogenase (ubiquinone) activity
?

PDBデータベースに由来する情報

site_id残基数詳細
AC13binding site for residue FES A 900
鎖名残基
ACYS69
ACYS80
ACYS97

AC24binding site for residue SF4 A 901
鎖名残基
ACYS133
ACYS136
AASP137
ACYS142

AC35binding site for residue SF4 A 902
鎖名残基
ACYS183
AILE184
ACYS186
ATHR187
ACYS189

AC46binding site for residue SF4 B 500
鎖名残基
BCYS381
BGLY382
BCYS384
BCYS387
BCYS427
BLEU429

AC56binding site for residue FES H 300
鎖名残基
HCYS127
HPRO131
HCYS132
HCYS168
HGLY170
HCYS172

AC69binding site for residue SF4 I 500
鎖名残基
ICYS140
ICYS169
IILE170
ITYR171
ICYS172
IGLY173
ITYR174
ICYS175
IGLU186

AC77binding site for residue SF4 I 501
鎖名残基
ICYS130
ICYS133
ICYS136
ITYR162
ICYS179
IVAL181
IILE184

AC87binding site for residue SF4 K 500
鎖名残基
KCYS85
KCYS86
KGLY121
KSER149
KCYS150
KCYS180
KPRO181

?

「HETATM」原子の座標から抽出されたリガンド結合部位

site_id残基数詳細
FES_6h8k_A_90010FE2/S2 (INORGANIC) CLUSTER binding site
鎖名残基ligand
AUNK67-TYR70FES: FE2/S2 (INORGANIC) CLUSTER
AGLY78-ARG81FES: FE2/S2 (INORGANIC) CLUSTER
AALA95FES: FE2/S2 (INORGANIC) CLUSTER
ACYS97FES: FE2/S2 (INORGANIC) CLUSTER

SF4_6h8k_A_90111IRON/SULFUR CLUSTER binding site
鎖名残基ligand
ALEU126SF4: IRON/SULFUR CLUSTER
AASP132-CYS133SF4: IRON/SULFUR CLUSTER
ACYS136-ASP137SF4: IRON/SULFUR CLUSTER
ACYS142SF4: IRON/SULFUR CLUSTER
AUNK181SF4: IRON/SULFUR CLUSTER
AUNK235-UNK236SF4: IRON/SULFUR CLUSTER
CILE382SF4: IRON/SULFUR CLUSTER
CPHE385SF4: IRON/SULFUR CLUSTER

SF4_6h8k_A_90210IRON/SULFUR CLUSTER binding site
鎖名残基ligand
ACYS183-VAL190SF4: IRON/SULFUR CLUSTER
ACYS233-UNK234SF4: IRON/SULFUR CLUSTER

FES_6h8k_H_30012FE2/S2 (INORGANIC) CLUSTER binding site
鎖名残基ligand
BUNK120FES: FE2/S2 (INORGANIC) CLUSTER
HCYS127FES: FE2/S2 (INORGANIC) CLUSTER
HTHR129-CYS132FES: FE2/S2 (INORGANIC) CLUSTER
HUNK167-CYS172FES: FE2/S2 (INORGANIC) CLUSTER

SF4_6h8k_B_50014IRON/SULFUR CLUSTER binding site
鎖名残基ligand
BUNK203SF4: IRON/SULFUR CLUSTER
BUNK221SF4: IRON/SULFUR CLUSTER
BUNK379-CYS384SF4: IRON/SULFUR CLUSTER
BCYS387-ARG388SF4: IRON/SULFUR CLUSTER
BTHR425SF4: IRON/SULFUR CLUSTER
BCYS427SF4: IRON/SULFUR CLUSTER
BLEU429-GLY430SF4: IRON/SULFUR CLUSTER

SF4_6h8k_K_50012IRON/SULFUR CLUSTER binding site
鎖名残基ligand
CARG141SF4: IRON/SULFUR CLUSTER
KALA84-CYS86SF4: IRON/SULFUR CLUSTER
KGLY121-THR122SF4: IRON/SULFUR CLUSTER
KGLY148-CYS150SF4: IRON/SULFUR CLUSTER
KGLY179-PRO181SF4: IRON/SULFUR CLUSTER

SF4_6h8k_I_50114IRON/SULFUR CLUSTER binding site
鎖名残基ligand
IARG129-CYS133SF4: IRON/SULFUR CLUSTER
ILEU135-CYS136SF4: IRON/SULFUR CLUSTER
ITHR159SF4: IRON/SULFUR CLUSTER
ITYR162SF4: IRON/SULFUR CLUSTER
ICYS179-VAL181SF4: IRON/SULFUR CLUSTER
IALA183-ILE184SF4: IRON/SULFUR CLUSTER

SF4_6h8k_I_50014IRON/SULFUR CLUSTER binding site
鎖名残基ligand
ICYS140-ALA144SF4: IRON/SULFUR CLUSTER
IILE164SF4: IRON/SULFUR CLUSTER
ICYS169-CYS175SF4: IRON/SULFUR CLUSTER
IGLU186SF4: IRON/SULFUR CLUSTER

?

UniProtにおけるモチーフ・データベースPROSITEからの機能情報

site_id残基数詳細
?

SwissProt/UniProtに記載されている蛋白質分子機能情報

site_id残基数詳細
?

CSAにおける酵素触媒機能の情報

site_id残基数詳細