6GSN
Structure of a partial yeast 48S preinitiation complex in closed conformation
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
a | 0003735 | molecular_function | structural constituent of ribosome |
a | 0005840 | cellular_component | ribosome |
a | 0006412 | biological_process | translation |
A | 0003735 | molecular_function | structural constituent of ribosome |
A | 0005840 | cellular_component | ribosome |
A | 0006412 | biological_process | translation |
A | 0015935 | cellular_component | small ribosomal subunit |
b | 0000028 | biological_process | ribosomal small subunit assembly |
b | 0003723 | molecular_function | RNA binding |
b | 0003735 | molecular_function | structural constituent of ribosome |
b | 0005840 | cellular_component | ribosome |
b | 0006412 | biological_process | translation |
b | 0022627 | cellular_component | cytosolic small ribosomal subunit |
b | 0046872 | molecular_function | metal ion binding |
b | 1990904 | cellular_component | ribonucleoprotein complex |
B | 0003735 | molecular_function | structural constituent of ribosome |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0005840 | cellular_component | ribosome |
B | 0006412 | biological_process | translation |
B | 0022627 | cellular_component | cytosolic small ribosomal subunit |
B | 1990904 | cellular_component | ribonucleoprotein complex |
c | 0000028 | biological_process | ribosomal small subunit assembly |
c | 0003735 | molecular_function | structural constituent of ribosome |
c | 0005840 | cellular_component | ribosome |
c | 0006412 | biological_process | translation |
c | 0022627 | cellular_component | cytosolic small ribosomal subunit |
c | 0030490 | biological_process | maturation of SSU-rRNA |
c | 1990904 | cellular_component | ribonucleoprotein complex |
C | 0003723 | molecular_function | RNA binding |
C | 0003735 | molecular_function | structural constituent of ribosome |
C | 0005840 | cellular_component | ribosome |
C | 0006412 | biological_process | translation |
C | 0015935 | cellular_component | small ribosomal subunit |
d | 0003735 | molecular_function | structural constituent of ribosome |
d | 0005840 | cellular_component | ribosome |
d | 0006412 | biological_process | translation |
d | 0008270 | molecular_function | zinc ion binding |
d | 0022627 | cellular_component | cytosolic small ribosomal subunit |
d | 1990904 | cellular_component | ribonucleoprotein complex |
D | 0003723 | molecular_function | RNA binding |
D | 0003735 | molecular_function | structural constituent of ribosome |
D | 0005634 | cellular_component | nucleus |
D | 0005840 | cellular_component | ribosome |
D | 0006412 | biological_process | translation |
D | 0015935 | cellular_component | small ribosomal subunit |
D | 0022626 | cellular_component | cytosolic ribosome |
D | 0022627 | cellular_component | cytosolic small ribosomal subunit |
D | 1990904 | cellular_component | ribonucleoprotein complex |
e | 0003735 | molecular_function | structural constituent of ribosome |
e | 0005829 | cellular_component | cytosol |
e | 0005840 | cellular_component | ribosome |
e | 0006412 | biological_process | translation |
e | 0022627 | cellular_component | cytosolic small ribosomal subunit |
e | 1990904 | cellular_component | ribonucleoprotein complex |
E | 0003723 | molecular_function | RNA binding |
E | 0003735 | molecular_function | structural constituent of ribosome |
E | 0005840 | cellular_component | ribosome |
E | 0006412 | biological_process | translation |
E | 0019843 | molecular_function | rRNA binding |
E | 0022627 | cellular_component | cytosolic small ribosomal subunit |
E | 0032991 | cellular_component | protein-containing complex |
E | 0043229 | cellular_component | intracellular organelle |
E | 1990904 | cellular_component | ribonucleoprotein complex |
f | 0003735 | molecular_function | structural constituent of ribosome |
f | 0005840 | cellular_component | ribosome |
f | 0006412 | biological_process | translation |
F | 0000028 | biological_process | ribosomal small subunit assembly |
F | 0003723 | molecular_function | RNA binding |
F | 0003729 | molecular_function | mRNA binding |
F | 0003735 | molecular_function | structural constituent of ribosome |
F | 0005840 | cellular_component | ribosome |
F | 0006412 | biological_process | translation |
F | 0015935 | cellular_component | small ribosomal subunit |
F | 0019843 | molecular_function | rRNA binding |
F | 0022627 | cellular_component | cytosolic small ribosomal subunit |
F | 1990904 | cellular_component | ribonucleoprotein complex |
g | 0001934 | biological_process | positive regulation of protein phosphorylation |
g | 0005080 | molecular_function | protein kinase C binding |
g | 0005634 | cellular_component | nucleus |
g | 0005829 | cellular_component | cytosol |
g | 0006417 | biological_process | regulation of translation |
g | 0043022 | molecular_function | ribosome binding |
g | 0045182 | molecular_function | translation regulator activity |
g | 0072344 | biological_process | rescue of stalled ribosome |
G | 0003735 | molecular_function | structural constituent of ribosome |
G | 0005840 | cellular_component | ribosome |
G | 0006412 | biological_process | translation |
G | 1990904 | cellular_component | ribonucleoprotein complex |
h | 0002181 | biological_process | cytoplasmic translation |
h | 0003735 | molecular_function | structural constituent of ribosome |
h | 0005737 | cellular_component | cytoplasm |
h | 0005829 | cellular_component | cytosol |
h | 0005840 | cellular_component | ribosome |
h | 0006412 | biological_process | translation |
h | 0022625 | cellular_component | cytosolic large ribosomal subunit |
h | 1990904 | cellular_component | ribonucleoprotein complex |
H | 0003735 | molecular_function | structural constituent of ribosome |
H | 0005840 | cellular_component | ribosome |
H | 0006364 | biological_process | rRNA processing |
H | 0006412 | biological_process | translation |
H | 0022627 | cellular_component | cytosolic small ribosomal subunit |
H | 0030686 | cellular_component | 90S preribosome |
H | 0032040 | cellular_component | small-subunit processome |
H | 0042274 | biological_process | ribosomal small subunit biogenesis |
H | 1990904 | cellular_component | ribonucleoprotein complex |
i | 0003723 | molecular_function | RNA binding |
i | 0003743 | molecular_function | translation initiation factor activity |
i | 0006413 | biological_process | translational initiation |
I | 0000462 | biological_process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
I | 0003735 | molecular_function | structural constituent of ribosome |
I | 0005840 | cellular_component | ribosome |
I | 0006412 | biological_process | translation |
I | 0022627 | cellular_component | cytosolic small ribosomal subunit |
I | 1990904 | cellular_component | ribonucleoprotein complex |
j | 0003676 | molecular_function | nucleic acid binding |
j | 0003723 | molecular_function | RNA binding |
j | 0003743 | molecular_function | translation initiation factor activity |
J | 0003723 | molecular_function | RNA binding |
J | 0003735 | molecular_function | structural constituent of ribosome |
J | 0005840 | cellular_component | ribosome |
J | 0006412 | biological_process | translation |
J | 0015935 | cellular_component | small ribosomal subunit |
J | 0019843 | molecular_function | rRNA binding |
J | 0022627 | cellular_component | cytosolic small ribosomal subunit |
J | 0042274 | biological_process | ribosomal small subunit biogenesis |
J | 0043226 | cellular_component | organelle |
J | 1990904 | cellular_component | ribonucleoprotein complex |
k | 0000049 | molecular_function | tRNA binding |
k | 0003924 | molecular_function | GTPase activity |
k | 0005525 | molecular_function | GTP binding |
K | 0003723 | molecular_function | RNA binding |
K | 0003735 | molecular_function | structural constituent of ribosome |
K | 0005737 | cellular_component | cytoplasm |
K | 0022627 | cellular_component | cytosolic small ribosomal subunit |
l | 0003743 | molecular_function | translation initiation factor activity |
l | 0006413 | biological_process | translational initiation |
L | 0003735 | molecular_function | structural constituent of ribosome |
L | 0005840 | cellular_component | ribosome |
L | 0006412 | biological_process | translation |
L | 0022627 | cellular_component | cytosolic small ribosomal subunit |
L | 1990904 | cellular_component | ribonucleoprotein complex |
m | 0003743 | molecular_function | translation initiation factor activity |
m | 0006413 | biological_process | translational initiation |
M | 0003735 | molecular_function | structural constituent of ribosome |
M | 0005840 | cellular_component | ribosome |
M | 0006412 | biological_process | translation |
N | 0003735 | molecular_function | structural constituent of ribosome |
N | 0005730 | cellular_component | nucleolus |
N | 0005840 | cellular_component | ribosome |
N | 0006412 | biological_process | translation |
N | 0022627 | cellular_component | cytosolic small ribosomal subunit |
N | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
N | 1990904 | cellular_component | ribonucleoprotein complex |
o | 0005852 | cellular_component | eukaryotic translation initiation factor 3 complex |
O | 0000028 | biological_process | ribosomal small subunit assembly |
O | 0003735 | molecular_function | structural constituent of ribosome |
O | 0005840 | cellular_component | ribosome |
O | 0006412 | biological_process | translation |
O | 0022627 | cellular_component | cytosolic small ribosomal subunit |
O | 1990904 | cellular_component | ribonucleoprotein complex |
p | 0003676 | molecular_function | nucleic acid binding |
p | 0003723 | molecular_function | RNA binding |
p | 0003743 | molecular_function | translation initiation factor activity |
p | 0005852 | cellular_component | eukaryotic translation initiation factor 3 complex |
p | 0006413 | biological_process | translational initiation |
p | 0031369 | molecular_function | translation initiation factor binding |
P | 0003723 | molecular_function | RNA binding |
P | 0003735 | molecular_function | structural constituent of ribosome |
P | 0005840 | cellular_component | ribosome |
P | 0006412 | biological_process | translation |
P | 0015935 | cellular_component | small ribosomal subunit |
q | 0003723 | molecular_function | RNA binding |
q | 0003743 | molecular_function | translation initiation factor activity |
q | 0005852 | cellular_component | eukaryotic translation initiation factor 3 complex |
q | 0006413 | biological_process | translational initiation |
q | 0031369 | molecular_function | translation initiation factor binding |
Q | 0000462 | biological_process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Q | 0003723 | molecular_function | RNA binding |
Q | 0003735 | molecular_function | structural constituent of ribosome |
Q | 0005840 | cellular_component | ribosome |
Q | 0006412 | biological_process | translation |
Q | 0022627 | cellular_component | cytosolic small ribosomal subunit |
Q | 1990904 | cellular_component | ribonucleoprotein complex |
R | 0003735 | molecular_function | structural constituent of ribosome |
R | 0005829 | cellular_component | cytosol |
R | 0005840 | cellular_component | ribosome |
R | 0006412 | biological_process | translation |
R | 1990904 | cellular_component | ribonucleoprotein complex |
s | 0001732 | biological_process | formation of cytoplasmic translation initiation complex |
s | 0002183 | biological_process | cytoplasmic translational initiation |
s | 0002188 | biological_process | translation reinitiation |
s | 0003723 | molecular_function | RNA binding |
s | 0003743 | molecular_function | translation initiation factor activity |
s | 0005515 | molecular_function | protein binding |
s | 0005737 | cellular_component | cytoplasm |
s | 0005852 | cellular_component | eukaryotic translation initiation factor 3 complex |
s | 0006412 | biological_process | translation |
s | 0006413 | biological_process | translational initiation |
s | 0010494 | cellular_component | cytoplasmic stress granule |
s | 0016282 | cellular_component | eukaryotic 43S preinitiation complex |
s | 0033290 | cellular_component | eukaryotic 48S preinitiation complex |
s | 0043614 | cellular_component | multi-eIF complex |
s | 0071541 | cellular_component | eukaryotic translation initiation factor 3 complex, eIF3m |
S | 0003676 | molecular_function | nucleic acid binding |
S | 0003723 | molecular_function | RNA binding |
S | 0003735 | molecular_function | structural constituent of ribosome |
S | 0005829 | cellular_component | cytosol |
S | 0005840 | cellular_component | ribosome |
S | 0006412 | biological_process | translation |
S | 0015935 | cellular_component | small ribosomal subunit |
S | 1990904 | cellular_component | ribonucleoprotein complex |
T | 0000028 | biological_process | ribosomal small subunit assembly |
T | 0003723 | molecular_function | RNA binding |
T | 0003735 | molecular_function | structural constituent of ribosome |
T | 0005840 | cellular_component | ribosome |
T | 0006412 | biological_process | translation |
T | 0022627 | cellular_component | cytosolic small ribosomal subunit |
T | 1990904 | cellular_component | ribonucleoprotein complex |
U | 0003735 | molecular_function | structural constituent of ribosome |
U | 0005840 | cellular_component | ribosome |
U | 0006412 | biological_process | translation |
U | 0015935 | cellular_component | small ribosomal subunit |
U | 0022627 | cellular_component | cytosolic small ribosomal subunit |
U | 1990904 | cellular_component | ribonucleoprotein complex |
V | 0000447 | biological_process | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
V | 0000461 | biological_process | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
V | 0003735 | molecular_function | structural constituent of ribosome |
V | 0005737 | cellular_component | cytoplasm |
V | 0005840 | cellular_component | ribosome |
V | 0006364 | biological_process | rRNA processing |
V | 0006412 | biological_process | translation |
V | 0022627 | cellular_component | cytosolic small ribosomal subunit |
V | 1990904 | cellular_component | ribonucleoprotein complex |
W | 0003735 | molecular_function | structural constituent of ribosome |
W | 0005840 | cellular_component | ribosome |
W | 0006412 | biological_process | translation |
W | 1990904 | cellular_component | ribonucleoprotein complex |
X | 0003735 | molecular_function | structural constituent of ribosome |
X | 0005840 | cellular_component | ribosome |
X | 0006412 | biological_process | translation |
X | 0015935 | cellular_component | small ribosomal subunit |
X | 0022627 | cellular_component | cytosolic small ribosomal subunit |
X | 1990904 | cellular_component | ribonucleoprotein complex |
Y | 0003735 | molecular_function | structural constituent of ribosome |
Y | 0005840 | cellular_component | ribosome |
Y | 0006412 | biological_process | translation |
Y | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1801 |
Chain | Residue |
2 | G361 |
2 | G362 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1802 |
Chain | Residue |
2 | A93 |
2 | G95 |
2 | G402 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1803 |
Chain | Residue |
2 | C553 |
2 | A554 |
2 | A555 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1804 |
Chain | Residue |
2 | A100 |
2 | U44 |
site_id | AC5 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1805 |
Chain | Residue |
2 | A1024 |
site_id | AC6 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1806 |
Chain | Residue |
2 | A549 |
2 | G556 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1807 |
Chain | Residue |
2 | C49 |
2 | A424 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1808 |
Chain | Residue |
2 | A992 |
2 | G1776 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1809 |
Chain | Residue |
2 | G1329 |
2 | C1331 |
2 | G1417 |
2 | C1418 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1810 |
Chain | Residue |
2 | G573 |
2 | A1137 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1811 |
Chain | Residue |
2 | A928 |
2 | A929 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1812 |
Chain | Residue |
2 | A1761 |
2 | G1765 |
2 | G1766 |
2 | U1769 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1814 |
Chain | Residue |
2 | C392 |
2 | A399 |
2 | A400 |
2 | G403 |
site_id | AD5 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1815 |
Chain | Residue |
2 | G16 |
2 | U607 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1816 |
Chain | Residue |
2 | G376 |
2 | A377 |
2 | U378 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1817 |
Chain | Residue |
2 | A28 |
2 | A436 |
site_id | AD8 |
Number of Residues | 5 |
Details | binding site for residue MG 2 1818 |
Chain | Residue |
2 | G370 |
2 | G371 |
2 | A604 |
2 | G606 |
2 | G612 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1819 |
Chain | Residue |
2 | U995 |
2 | G996 |
2 | A997 |
2 | U1003 |
site_id | AE1 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1820 |
Chain | Residue |
2 | G42 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1821 |
Chain | Residue |
2 | U44 |
2 | A46 |
2 | A47 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1822 |
Chain | Residue |
2 | A1760 |
2 | A1761 |
2 | G1766 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue MG 2 1823 |
Chain | Residue |
2 | U617 |
2 | A618 |
2 | A619 |
2 | A620 |
2 | MG1825 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1824 |
Chain | Residue |
2 | U562 |
2 | G563 |
2 | A578 |
2 | A579 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1825 |
Chain | Residue |
2 | A618 |
2 | A619 |
2 | A620 |
2 | MG1823 |
site_id | AE7 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1826 |
Chain | Residue |
2 | A1328 |
2 | G1329 |
2 | A1330 |
site_id | AE8 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1827 |
Chain | Residue |
2 | A621 |
2 | A622 |
site_id | AE9 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1828 |
Chain | Residue |
2 | A100 |
2 | U101 |
2 | A358 |
2 | C360 |
site_id | AF1 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1829 |
Chain | Residue |
2 | A604 |
X | LYS110 |
site_id | AF2 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1830 |
Chain | Residue |
2 | G1109 |
2 | G1110 |
site_id | AF3 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1831 |
Chain | Residue |
2 | G95 |
site_id | AF4 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1832 |
Chain | Residue |
2 | G1725 |
2 | U1726 |
site_id | AF5 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1833 |
Chain | Residue |
2 | U1628 |
2 | G1790 |
2 | G1791 |
site_id | AF6 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1834 |
Chain | Residue |
2 | U64 |
2 | A65 |
site_id | AF7 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1836 |
Chain | Residue |
2 | G460 |
site_id | AF8 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1837 |
Chain | Residue |
2 | G466 |
site_id | AF9 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1838 |
Chain | Residue |
2 | C624 |
site_id | AG1 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1839 |
Chain | Residue |
2 | G984 |
2 | G985 |
2 | G986 |
site_id | AG2 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1842 |
Chain | Residue |
2 | G355 |
2 | C309 |
2 | U310 |
2 | G354 |
site_id | AG3 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1843 |
Chain | Residue |
2 | C1005 |
site_id | AG4 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1844 |
Chain | Residue |
2 | G421 |
2 | G422 |
site_id | AG5 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1845 |
Chain | Residue |
2 | U1302 |
2 | G1303 |
2 | U1304 |
site_id | AG6 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1846 |
Chain | Residue |
2 | A977 |
2 | A978 |
site_id | AG7 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1847 |
Chain | Residue |
2 | G57 |
2 | U58 |
site_id | AG8 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1848 |
Chain | Residue |
2 | A760 |
2 | G761 |
site_id | AG9 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1849 |
Chain | Residue |
2 | G1139 |
2 | G1140 |
site_id | AH1 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1850 |
Chain | Residue |
2 | C826 |
2 | A843 |
site_id | AH2 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1851 |
Chain | Residue |
2 | C529 |
site_id | AH3 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1852 |
Chain | Residue |
2 | G1293 |
2 | U1301 |
2 | U1302 |
site_id | AH4 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1853 |
Chain | Residue |
2 | G937 |
2 | A939 |
site_id | AH5 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1854 |
Chain | Residue |
2 | U988 |
2 | G1010 |
site_id | AH6 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1855 |
Chain | Residue |
2 | U211 |
2 | A212 |
site_id | AH7 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1856 |
Chain | Residue |
2 | G1537 |
2 | G1538 |
2 | G1539 |
site_id | AH8 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1857 |
Chain | Residue |
2 | U334 |
2 | G335 |
site_id | AH9 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1858 |
Chain | Residue |
2 | G874 |
2 | G875 |
site_id | AI1 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1859 |
Chain | Residue |
2 | U378 |
2 | U379 |
site_id | AI2 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1860 |
Chain | Residue |
2 | G1007 |
O | LYS129 |
site_id | AI3 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1861 |
Chain | Residue |
2 | U1054 |
site_id | AI4 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1862 |
Chain | Residue |
2 | A923 |
site_id | AI5 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1863 |
Chain | Residue |
2 | G1393 |
site_id | AI6 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1864 |
Chain | Residue |
2 | U1281 |
2 | U1282 |
2 | U1284 |
site_id | AI7 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1865 |
Chain | Residue |
2 | U1466 |
2 | A1467 |
2 | G1540 |
T | ASN85 |
site_id | AI8 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1866 |
Chain | Residue |
2 | A1444 |
2 | C1445 |
f | THR86 |
site_id | AI9 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1867 |
Chain | Residue |
2 | G1199 |
site_id | AJ1 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1868 |
Chain | Residue |
2 | G1198 |
2 | G1199 |
2 | G1200 |
site_id | AJ2 |
Number of Residues | 5 |
Details | binding site for residue MG 2 1869 |
Chain | Residue |
2 | G1270 |
2 | U1271 |
2 | C1429 |
2 | G1436 |
2 | C1437 |
site_id | AJ3 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1870 |
Chain | Residue |
2 | A1195 |
2 | C1196 |
site_id | AJ4 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1871 |
Chain | Residue |
2 | G1267 |
2 | U1268 |
site_id | AJ5 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1872 |
Chain | Residue |
2 | G1272 |
2 | C1273 |
2 | G1426 |
2 | MG1875 |
site_id | AJ6 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1873 |
Chain | Residue |
2 | G1539 |
2 | G1540 |
2 | C1566 |
2 | A1567 |
site_id | AJ7 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1874 |
Chain | Residue |
2 | G1482 |
2 | G1519 |
2 | U1520 |
site_id | AJ8 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1875 |
Chain | Residue |
2 | C1273 |
2 | A1425 |
2 | G1426 |
2 | MG1872 |
site_id | AJ9 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1876 |
Chain | Residue |
2 | G1200 |
2 | A1201 |
2 | A1202 |
site_id | AK1 |
Number of Residues | 1 |
Details | binding site for residue MG C 301 |
Chain | Residue |
C | LYS121 |
site_id | AK2 |
Number of Residues | 3 |
Details | binding site for residue ZN f 501 |
Chain | Residue |
f | ASN123 |
f | CYS142 |
f | THR145 |
site_id | AK3 |
Number of Residues | 1 |
Details | binding site for residue MG h 101 |
Chain | Residue |
h | LYS14 |
site_id | AK4 |
Number of Residues | 2 |
Details | binding site for residue MG k 601 |
Chain | Residue |
k | SER114 |
k | THR137 |
site_id | AK5 |
Number of Residues | 18 |
Details | binding site for residue GCP k 602 |
Chain | Residue |
k | HIS108 |
k | VAL109 |
k | ALA110 |
k | HIS111 |
k | LYS113 |
k | THR115 |
k | ASN135 |
k | ILE136 |
k | THR137 |
k | PRO195 |
k | GLY196 |
k | ASN249 |
k | ASP252 |
k | GLN286 |
l | THR238 |
l | SER264 |
l | THR265 |
l | ARG266 |
site_id | AK6 |
Number of Residues | 4 |
Details | binding site for residue MET k 603 |
Chain | Residue |
k | TYR142 |
k | ARG319 |
k | PHE381 |
k | GLU383 |
site_id | AK7 |
Number of Residues | 3 |
Details | binding site for residue ZN l 301 |
Chain | Residue |
l | CYS236 |
l | CYS259 |
l | SER264 |
site_id | AK8 |
Number of Residues | 2 |
Details | binding site for residue MG B 301 |
Chain | Residue |
2 | G1046 |
B | GLN157 |
site_id | AK9 |
Number of Residues | 4 |
Details | binding site for residue ZN a 101 |
Chain | Residue |
a | CYS23 |
a | ASN25 |
a | CYS26 |
a | CYS74 |
site_id | AL1 |
Number of Residues | 2 |
Details | binding site for residue MG a 102 |
Chain | Residue |
2 | A1764 |
a | HIS80 |
site_id | AL2 |
Number of Residues | 4 |
Details | binding site for residue ZN b 101 |
Chain | Residue |
b | CYS37 |
b | PRO38 |
b | GLY39 |
b | THR61 |
Functional Information from PROSITE/UniProt
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmngrnnGKKlkavrIVkhT |
Chain | Residue | Details |
F | GLU93-THR119 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GyvILTTSaGIMdheeAH |
Chain | Residue | Details |
W | GLY100-HIS117 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GLrIgrieDvTPvPSD |
Chain | Residue | Details |
O | LEU102-ASP124 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR |
Chain | Residue | Details |
X | LYS62-ARG69 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgQcRPIS |
Chain | Residue | Details |
L | GLY120-SER132 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKvfnqveIrpemVGhyLGEFsiT |
Chain | Residue | Details |
P | ASN98-THR122 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvSQvyAirqAiAKGL |
Chain | Residue | Details |
Q | GLY71-LEU89 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY |
Chain | Residue | Details |
N | VAL98-TYR128 |
site_id | PS00528 |
Number of Residues | 15 |
Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPhhWmLdK |
Chain | Residue | Details |
E | HIS8-LYS22 |
site_id | PS00529 |
Number of Residues | 23 |
Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. YGggKStGFGlVYNSvadakkfE |
Chain | Residue | Details |
Y | TYR64-GLU86 |
site_id | PS00548 |
Number of Residues | 37 |
Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfadGfLihSgqpVndfIEtatrhvlLrqGvlG |
Chain | Residue | Details |
D | ALA147-GLY183 |
site_id | PS00578 |
Number of Residues | 12 |
Details | RIBOSOMAL_S6E Ribosomal protein S6e signature. IAGGnDkqGfPM |
Chain | Residue | Details |
G | ILE52-MET63 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAvvVVGDsn.GhVGlGiktak.EVag.AI |
Chain | Residue | Details |
C | GLY98-ILE130 |
site_id | PS00628 |
Number of Residues | 20 |
Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PhkhvdaSgsInRkVLQsLE |
Chain | Residue | Details |
T | PRO90-GLU109 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVYKlglAkSvhhARvLI |
Chain | Residue | Details |
J | LEU105-ILE129 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHfwGlrVRGQ |
Chain | Residue | Details |
S | ARG123-GLN136 |
site_id | PS00678 |
Number of Residues | 15 |
Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. CVTGsaDySIKLWDV |
Chain | Residue | Details |
s | CYS67-VAL81 | |
g | ALA81-LEU95 | |
g | ILE123-THR137 | |
g | ALA218-LEU232 |
site_id | PS00712 |
Number of Residues | 16 |
Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. IqSKrLRNkIAGYtTH |
Chain | Residue | Details |
R | ILE41-HIS56 |
site_id | PS00733 |
Number of Residues | 8 |
Details | RIBOSOMAL_S26E Ribosomal protein S26e signature. YCISCAIH |
Chain | Residue | Details |
a | TYR73-HIS80 |
site_id | PS00948 |
Number of Residues | 14 |
Details | RIBOSOMAL_S7E Ribosomal protein S7e signature. KLtRELEKKFQdRH |
Chain | Residue | Details |
H | LYS76-HIS89 |
site_id | PS00961 |
Number of Residues | 9 |
Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL |
Chain | Residue | Details |
c | GLU58-LEU66 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. AqLLLAARVHLG |
Chain | Residue | Details |
A | ALA14-GLY25 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlVIVtDprsDaqaIkEssyvNIP |
Chain | Residue | Details |
A | PRO118-PRO142 |
site_id | PS00996 |
Number of Residues | 9 |
Details | RIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA |
Chain | Residue | Details |
V | LEU11-ALA19 |
site_id | PS01168 |
Number of Residues | 33 |
Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgClnittvFShAqtavtCesCStvLctPtG |
Chain | Residue | Details |
b | LYS36-GLY68 |
site_id | PS01189 |
Number of Residues | 19 |
Details | RIBOSOMAL_S12E Ribosomal protein S12e signature. ALKvvLrtSlvhDGLarGL |
Chain | Residue | Details |
M | ALA20-LEU38 |
site_id | PS01191 |
Number of Residues | 13 |
Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVvEvCLaDL |
Chain | Residue | Details |
B | LEU61-LEU73 |
site_id | PS01193 |
Number of Residues | 20 |
Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RaaTGAkraqf.RkKrKfELG |
Chain | Residue | Details |
I | ARG11-GLY30 |
site_id | PS01262 |
Number of Residues | 23 |
Details | IF1A Eukaryotic initiation factor 1A signature. MlGnGRveasCfDGnkRmaHIrG |
Chain | Residue | Details |
i | MET41-GLY63 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956 |
Chain | Residue | Details |
s | SER302 | |
k | ASN249 | |
k | SER284 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:17287358, ECO:0007744|PubMed:18407956 |
Chain | Residue | Details |
k | SER258 |