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6GO6

TdT chimera (Loop1 of pol mu) - ternary complex with downstream dsDNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 601
ChainResidue
ATHR253
AVAL255
AVAL258
AHOH841
AHOH912

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 602
ChainResidue
AASP343
AASP345
ADCT603
AHOH779

site_idAC3
Number of Residues22
Detailsbinding site for residue DCT A 603
ChainResidue
AGLY332
AGLY333
AARG336
ALYS338
AGLY341
AHIS342
AASP343
AASP345
AALA389
AASN391
ALEU392
ATRP451
AGLY453
AARG455
AGLU458
AMG602
AHOH705
AHOH708
AHOH762
AHOH772
AHOH779
FDG6

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGkmtGhDVDFLItsP
ChainResidueDetails
AGLY332-PRO351

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305, ECO:0007744|PDB:4I2B, ECO:0007744|PDB:4I2C, ECO:0007744|PDB:4I2D, ECO:0007744|PDB:4I2E
ChainResidueDetails
AGLY333
AHIS342
AGLY450

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305, ECO:0007744|PDB:1JMS, ECO:0007744|PDB:4I2B
ChainResidueDetails
AASP343
AASP345
AASP435

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21183079
ChainResidueDetails
ASER134

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 632
ChainResidueDetails
AASP343metal ligand
AASP345metal ligand
AASP435metal ligand, proton acceptor, proton donor

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PDB entries from 2024-07-10

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