6FZ3

Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and inhibitor bound

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004379	molecular_function	glycylpeptide N-tetradecanoyltransferase activity
A	0006499	biological_process	N-terminal protein myristoylation
B	0004379	molecular_function	glycylpeptide N-tetradecanoyltransferase activity
B	0006499	biological_process	N-terminal protein myristoylation

Functional Information from PDB Data

site_id	AC1
Number of Residues	17
Details	binding site for residue EBK A 1000

Chain	Residue
A	VAL181
A	SER405
A	LEU416
A	TYR420
A	GLY472
A	LEU495
A	GLN496
A	HOH1105
A	HOH1120
A	PHE188
A	PHE190
A	ASN246
A	THR282
A	GLY284
A	TYR296
A	HIS298
A	PHE311

---

site_id	AC2
Number of Residues	30
Details	binding site for residue MYA A 1001

Chain	Residue
A	ARG115
A	TYR117
A	GLN118
A	PHE119
A	TRP120
A	ASN179
A	TYR180
A	ASN246
A	PHE247
A	LEU248
A	CYS249
A	VAL250
A	ARG255
A	SER256
A	LYS257
A	ARG258
A	VAL259
A	ALA260
A	PRO261
A	THR268
A	VAL271
A	PHE277
A	GLN278
A	TYR281
A	THR282
A	LEU287
A	ASN317
A	TYR479
A	MG1002
A	HOH1137

---

site_id	AC3
Number of Residues	6
Details	binding site for residue MG A 1002

Chain	Residue
A	LEU254
A	SER256
A	LYS257
A	ARG258
A	VAL259
A	MYA1001

---

site_id	AC4
Number of Residues	10
Details	binding site for residue GOL A 1003

Chain	Residue
A	PRO126
A	LYS289
A	PRO290
A	VAL291
A	TYR477
A	LEU478
A	TRP481
A	LYS482
A	CYS483
A	HOH1150

---

site_id	AC5
Number of Residues	15
Details	binding site for residue EBK B 1000

Chain	Residue
B	VAL181
B	ASP183
B	PHE188
B	PHE190
B	ASN246
B	THR282
B	GLY284
B	TYR296
B	HIS298
B	PHE311
B	SER405
B	TYR420
B	LEU495
B	GLN496
B	HOH1154

---

site_id	AC6
Number of Residues	25
Details	binding site for residue MYA B 1001

Chain	Residue
B	THR282
B	LEU287
B	TYR479
B	MG1002
B	TYR117
B	GLN118
B	PHE119
B	TRP120
B	ASN179
B	TYR180
B	VAL181
B	PHE247
B	LEU248
B	CYS249
B	VAL250
B	ARG255
B	SER256
B	ARG258
B	VAL259
B	ALA260
B	PRO261
B	THR268
B	VAL271
B	PHE277
B	TYR281

---

site_id	AC7
Number of Residues	6
Details	binding site for residue MG B 1002

Chain	Residue
B	LEU254
B	SER256
B	LYS257
B	ARG258
B	VAL259
B	MYA1001

---

site_id	AC8
Number of Residues	7
Details	binding site for residue GOL B 1003

Chain	Residue
B	LYS289
B	VAL291
B	TYR477
B	LEU478
B	TRP481
B	LYS482
B	CYS483

---

Functional Information from PROSITE/UniProt

site_id	PS00975
Number of Residues	9
Details	NMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK

Chain	Residue	Details
A	GLU244-LYS252

---

site_id	PS00976
Number of Residues	7
Details	NMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG

Chain	Residue	Details
A	LYS466-GLY472

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32111831","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"32103017","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"SEP-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}

Chain

Residue

Details

---