6FRK
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
This is a non-PDB format compatible entry.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| 3 | 0003735 | molecular_function | structural constituent of ribosome |
| 3 | 0005840 | cellular_component | ribosome |
| 3 | 0006412 | biological_process | translation |
| 4 | 0003735 | molecular_function | structural constituent of ribosome |
| 4 | 0005840 | cellular_component | ribosome |
| 4 | 0006412 | biological_process | translation |
| a | 0003735 | molecular_function | structural constituent of ribosome |
| a | 0005840 | cellular_component | ribosome |
| a | 0006412 | biological_process | translation |
| a | 0015934 | cellular_component | large ribosomal subunit |
| A | 0003723 | molecular_function | RNA binding |
| A | 0003735 | molecular_function | structural constituent of ribosome |
| A | 0005840 | cellular_component | ribosome |
| A | 0006412 | biological_process | translation |
| A | 0015934 | cellular_component | large ribosomal subunit |
| b | 0003735 | molecular_function | structural constituent of ribosome |
| b | 0005840 | cellular_component | ribosome |
| b | 0006412 | biological_process | translation |
| B | 0003735 | molecular_function | structural constituent of ribosome |
| B | 0005840 | cellular_component | ribosome |
| B | 0006412 | biological_process | translation |
| c | 0003723 | molecular_function | RNA binding |
| C | 0003735 | molecular_function | structural constituent of ribosome |
| C | 0005840 | cellular_component | ribosome |
| C | 0006412 | biological_process | translation |
| d | 0003735 | molecular_function | structural constituent of ribosome |
| d | 0005840 | cellular_component | ribosome |
| d | 0006412 | biological_process | translation |
| D | 0003735 | molecular_function | structural constituent of ribosome |
| D | 0005840 | cellular_component | ribosome |
| D | 0006412 | biological_process | translation |
| D | 0008097 | molecular_function | 5S rRNA binding |
| e | 0003735 | molecular_function | structural constituent of ribosome |
| e | 0005840 | cellular_component | ribosome |
| e | 0006412 | biological_process | translation |
| E | 0003735 | molecular_function | structural constituent of ribosome |
| E | 0005840 | cellular_component | ribosome |
| E | 0006412 | biological_process | translation |
| f | 0003735 | molecular_function | structural constituent of ribosome |
| f | 0005840 | cellular_component | ribosome |
| f | 0006412 | biological_process | translation |
| F | 0003723 | molecular_function | RNA binding |
| g | 0003735 | molecular_function | structural constituent of ribosome |
| g | 0005840 | cellular_component | ribosome |
| g | 0006412 | biological_process | translation |
| G | 0003723 | molecular_function | RNA binding |
| G | 0042254 | biological_process | ribosome biogenesis |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| h | 0000463 | biological_process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| h | 0003735 | molecular_function | structural constituent of ribosome |
| h | 0005840 | cellular_component | ribosome |
| h | 0006412 | biological_process | translation |
| h | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| H | 0003735 | molecular_function | structural constituent of ribosome |
| H | 0005840 | cellular_component | ribosome |
| H | 0006412 | biological_process | translation |
| H | 0019843 | molecular_function | rRNA binding |
| i | 0003735 | molecular_function | structural constituent of ribosome |
| i | 0005840 | cellular_component | ribosome |
| i | 0006412 | biological_process | translation |
| I | 0003735 | molecular_function | structural constituent of ribosome |
| I | 0005840 | cellular_component | ribosome |
| I | 0006412 | biological_process | translation |
| j | 0003735 | molecular_function | structural constituent of ribosome |
| j | 0005840 | cellular_component | ribosome |
| j | 0006412 | biological_process | translation |
| J | 0003735 | molecular_function | structural constituent of ribosome |
| J | 0005840 | cellular_component | ribosome |
| J | 0006412 | biological_process | translation |
| k | 0003735 | molecular_function | structural constituent of ribosome |
| k | 0005840 | cellular_component | ribosome |
| k | 0006412 | biological_process | translation |
| l | 0003735 | molecular_function | structural constituent of ribosome |
| l | 0005840 | cellular_component | ribosome |
| l | 0006412 | biological_process | translation |
| L | 0003735 | molecular_function | structural constituent of ribosome |
| L | 0005840 | cellular_component | ribosome |
| L | 0006412 | biological_process | translation |
| m | 0003735 | molecular_function | structural constituent of ribosome |
| m | 0005840 | cellular_component | ribosome |
| m | 0006412 | biological_process | translation |
| M | 0003723 | molecular_function | RNA binding |
| M | 0003735 | molecular_function | structural constituent of ribosome |
| M | 0005840 | cellular_component | ribosome |
| M | 0006412 | biological_process | translation |
| n | 0003735 | molecular_function | structural constituent of ribosome |
| n | 0005840 | cellular_component | ribosome |
| n | 0006412 | biological_process | translation |
| N | 0003735 | molecular_function | structural constituent of ribosome |
| N | 0005840 | cellular_component | ribosome |
| N | 0006412 | biological_process | translation |
| o | 0003735 | molecular_function | structural constituent of ribosome |
| o | 0005840 | cellular_component | ribosome |
| o | 0006412 | biological_process | translation |
| O | 0003735 | molecular_function | structural constituent of ribosome |
| O | 0005840 | cellular_component | ribosome |
| O | 0006412 | biological_process | translation |
| O | 0015934 | cellular_component | large ribosomal subunit |
| p | 0003735 | molecular_function | structural constituent of ribosome |
| p | 0005840 | cellular_component | ribosome |
| p | 0006412 | biological_process | translation |
| P | 0003735 | molecular_function | structural constituent of ribosome |
| P | 0005840 | cellular_component | ribosome |
| P | 0006412 | biological_process | translation |
| P | 0015934 | cellular_component | large ribosomal subunit |
| q | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| q | 0008312 | molecular_function | 7S RNA binding |
| q | 0048500 | cellular_component | signal recognition particle |
| Q | 0003735 | molecular_function | structural constituent of ribosome |
| Q | 0005840 | cellular_component | ribosome |
| Q | 0006412 | biological_process | translation |
| r | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| r | 0008312 | molecular_function | 7S RNA binding |
| r | 0048500 | cellular_component | signal recognition particle |
| R | 0003723 | molecular_function | RNA binding |
| R | 0003735 | molecular_function | structural constituent of ribosome |
| R | 0005840 | cellular_component | ribosome |
| R | 0006412 | biological_process | translation |
| R | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| S | 0003735 | molecular_function | structural constituent of ribosome |
| S | 0005840 | cellular_component | ribosome |
| S | 0006412 | biological_process | translation |
| T | 0003735 | molecular_function | structural constituent of ribosome |
| T | 0005840 | cellular_component | ribosome |
| T | 0006412 | biological_process | translation |
| u | 0003723 | molecular_function | RNA binding |
| u | 0005047 | molecular_function | signal recognition particle binding |
| u | 0005634 | cellular_component | nucleus |
| u | 0005730 | cellular_component | nucleolus |
| u | 0005737 | cellular_component | cytoplasm |
| u | 0005783 | cellular_component | endoplasmic reticulum |
| u | 0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting |
| u | 0005829 | cellular_component | cytosol |
| u | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| u | 0008312 | molecular_function | 7S RNA binding |
| u | 0030942 | molecular_function | endoplasmic reticulum signal peptide binding |
| u | 1990904 | cellular_component | ribonucleoprotein complex |
| U | 0003735 | molecular_function | structural constituent of ribosome |
| U | 0005840 | cellular_component | ribosome |
| U | 0006412 | biological_process | translation |
| v | 0005525 | molecular_function | GTP binding |
| V | 0003735 | molecular_function | structural constituent of ribosome |
| V | 0005840 | cellular_component | ribosome |
| V | 0006412 | biological_process | translation |
| w | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| w | 0008312 | molecular_function | 7S RNA binding |
| w | 0045900 | biological_process | negative regulation of translational elongation |
| w | 0048500 | cellular_component | signal recognition particle |
| W | 0003735 | molecular_function | structural constituent of ribosome |
| x | 0000166 | molecular_function | nucleotide binding |
| x | 0003723 | molecular_function | RNA binding |
| x | 0003924 | molecular_function | GTPase activity |
| x | 0005525 | molecular_function | GTP binding |
| x | 0005634 | cellular_component | nucleus |
| x | 0005737 | cellular_component | cytoplasm |
| x | 0005783 | cellular_component | endoplasmic reticulum |
| x | 0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting |
| x | 0005829 | cellular_component | cytosol |
| x | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| x | 0006616 | biological_process | SRP-dependent cotranslational protein targeting to membrane, translocation |
| x | 0006617 | biological_process | SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition |
| x | 0008312 | molecular_function | 7S RNA binding |
| x | 0016607 | cellular_component | nuclear speck |
| x | 0016787 | molecular_function | hydrolase activity |
| x | 0019003 | molecular_function | GDP binding |
| x | 0030593 | biological_process | neutrophil chemotaxis |
| x | 0030851 | biological_process | granulocyte differentiation |
| x | 0030942 | molecular_function | endoplasmic reticulum signal peptide binding |
| x | 0031017 | biological_process | exocrine pancreas development |
| x | 0043021 | molecular_function | ribonucleoprotein complex binding |
| x | 0045047 | biological_process | protein targeting to ER |
| x | 0048500 | cellular_component | signal recognition particle |
| x | 1990904 | cellular_component | ribonucleoprotein complex |
| X | 0003735 | molecular_function | structural constituent of ribosome |
| X | 0005840 | cellular_component | ribosome |
| X | 0006412 | biological_process | translation |
| X | 0019843 | molecular_function | rRNA binding |
| y | 0003924 | molecular_function | GTPase activity |
| y | 0005047 | molecular_function | signal recognition particle binding |
| y | 0005525 | molecular_function | GTP binding |
| y | 0005785 | cellular_component | signal recognition particle receptor complex |
| y | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| y | 0006886 | biological_process | intracellular protein transport |
| Y | 0003723 | molecular_function | RNA binding |
| Y | 0003735 | molecular_function | structural constituent of ribosome |
| Y | 0005840 | cellular_component | ribosome |
| Y | 0006412 | biological_process | translation |
| Y | 0015934 | cellular_component | large ribosomal subunit |
| z | 0003723 | molecular_function | RNA binding |
| z | 0005737 | cellular_component | cytoplasm |
| z | 0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting |
| z | 0005829 | cellular_component | cytosol |
| z | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
| z | 0008312 | molecular_function | 7S RNA binding |
| z | 0030942 | molecular_function | endoplasmic reticulum signal peptide binding |
| z | 0045047 | biological_process | protein targeting to ER |
| z | 0048500 | cellular_component | signal recognition particle |
| z | 1990904 | cellular_component | ribonucleoprotein complex |
| Z | 0003735 | molecular_function | structural constituent of ribosome |
| Z | 0005840 | cellular_component | ribosome |
| Z | 0006412 | biological_process | translation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5101 |
| Chain | Residue |
| 5 | U3915 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5102 |
| Chain | Residue |
| 5 | A38 |
| 5 | G40 |
| 5 | C41 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5103 |
| Chain | Residue |
| 5 | U43 |
| 5 | A44 |
| 5 | U45 |
| N | LYS83 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5104 |
| Chain | Residue |
| 5 | G48 |
| 5 | A47 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5105 |
| Chain | Residue |
| 5 | A51 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5106 |
| Chain | Residue |
| 5 | G21 |
| 5 | A56 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5107 |
| Chain | Residue |
| 5 | A61 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5108 |
| Chain | Residue |
| 5 | A62 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5109 |
| Chain | Residue |
| 5 | A84 |
| 5 | G85 |
| 5 | G1383 |
| 5 | C1384 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5110 |
| Chain | Residue |
| 5 | U77 |
| site_id | AD2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5111 |
| Chain | Residue |
| 5 | A105 |
| 5 | A106 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5112 |
| Chain | Residue |
| 5 | C112 |
| 5 | C155 |
| 5 | G156 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5114 |
| Chain | Residue |
| 5 | A198 |
| 5 | G241 |
| site_id | AD5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5115 |
| Chain | Residue |
| 5 | A235 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5116 |
| Chain | Residue |
| 5 | U231 |
| 5 | A235 |
| site_id | AD7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5117 |
| Chain | Residue |
| 5 | C282 |
| site_id | AD8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5118 |
| Chain | Residue |
| 5 | G288 |
| site_id | AD9 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5119 |
| Chain | Residue |
| 5 | U291 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5120 |
| Chain | Residue |
| 5 | A47 |
| 5 | G48 |
| 5 | U291 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5121 |
| Chain | Residue |
| 5 | U316 |
| 5 | A317 |
| 5 | U4354 |
| site_id | AE3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5123 |
| Chain | Residue |
| 5 | C351 |
| site_id | AE4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5124 |
| Chain | Residue |
| 5 | G356 |
| 5 | C358 |
| C | GLY98 |
| site_id | AE5 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5125 |
| Chain | Residue |
| 5 | G356 |
| 5 | A359 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5126 |
| Chain | Residue |
| 5 | A383 |
| 5 | A2332 |
| site_id | AE7 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5127 |
| Chain | Residue |
| 5 | A407 |
| 5 | A410 |
| 5 | G2331 |
| site_id | AE8 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5128 |
| Chain | Residue |
| 5 | A410 |
| 5 | G415 |
| 5 | U416 |
| 5 | G2331 |
| site_id | AE9 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5129 |
| Chain | Residue |
| 5 | C414 |
| 5 | G415 |
| 5 | U416 |
| 5 | G417 |
| site_id | AF1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5130 |
| Chain | Residue |
| 5 | A427 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5131 |
| Chain | Residue |
| 5 | C1665 |
| 5 | A2279 |
| 5 | G2280 |
| site_id | AF3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5132 |
| Chain | Residue |
| 5 | A2282 |
| site_id | AF4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5133 |
| Chain | Residue |
| 5 | A2367 |
| site_id | AF5 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5134 |
| Chain | Residue |
| 5 | U2369 |
| 5 | A2370 |
| 5 | U2826 |
| site_id | AF6 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5135 |
| Chain | Residue |
| 5 | C2393 |
| site_id | AF7 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5136 |
| Chain | Residue |
| 5 | A2401 |
| 5 | C2785 |
| site_id | AF8 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5137 |
| Chain | Residue |
| 5 | C2410 |
| 5 | C2411 |
| 5 | A2428 |
| site_id | AF9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5138 |
| Chain | Residue |
| 5 | C2422 |
| 5 | A2423 |
| site_id | AG1 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5139 |
| Chain | Residue |
| 5 | C2446 |
| 5 | G2510 |
| site_id | AG2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5140 |
| Chain | Residue |
| 5 | G2514 |
| 5 | G2516 |
| site_id | AG3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5141 |
| Chain | Residue |
| 5 | G2677 |
| site_id | AG4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5142 |
| Chain | Residue |
| 5 | G2402 |
| 5 | A2783 |
| 5 | C2784 |
| site_id | AG5 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5143 |
| Chain | Residue |
| 5 | A2789 |
| 5 | U2828 |
| site_id | AG6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5144 |
| Chain | Residue |
| 5 | C2791 |
| 5 | C2792 |
| site_id | AG7 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5145 |
| Chain | Residue |
| 5 | A1599 |
| 5 | A1600 |
| 5 | C2794 |
| site_id | AG8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5146 |
| Chain | Residue |
| 5 | A2845 |
| site_id | AG9 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5147 |
| Chain | Residue |
| 5 | A2857 |
| site_id | AH1 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5148 |
| Chain | Residue |
| 5 | A2879 |
| 5 | A3629 |
| site_id | AH2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5149 |
| Chain | Residue |
| 5 | C3632 |
| 5 | C3782 |
| site_id | AH3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5150 |
| Chain | Residue |
| 5 | C3636 |
| site_id | AH4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5151 |
| Chain | Residue |
| 5 | U3645 |
| 5 | A3642 |
| 5 | U3644 |
| site_id | AH5 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5152 |
| Chain | Residue |
| 5 | C3701 |
| 5 | U3704 |
| 5 | G3705 |
| 5 | U3745 |
| site_id | AH6 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5153 |
| Chain | Residue |
| 5 | G3689 |
| 5 | A3747 |
| 5 | A3748 |
| 5 | U3818 |
| site_id | AH7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5154 |
| Chain | Residue |
| 5 | G4543 |
| site_id | AH8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5155 |
| Chain | Residue |
| 5 | U3778 |
| site_id | AH9 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5156 |
| Chain | Residue |
| 5 | A3783 |
| site_id | AI1 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5157 |
| Chain | Residue |
| 5 | A3747 |
| 5 | A3817 |
| site_id | AI2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5158 |
| Chain | Residue |
| 5 | A2363 |
| 5 | U3853 |
| site_id | AI3 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5159 |
| Chain | Residue |
| 5 | C1325 |
| 5 | A3877 |
| 5 | G3879 |
| site_id | AI4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5160 |
| Chain | Residue |
| 5 | C1678 |
| site_id | AI5 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5161 |
| Chain | Residue |
| 5 | C4193 |
| 5 | U4194 |
| site_id | AI6 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5162 |
| Chain | Residue |
| 5 | G40 |
| 5 | C41 |
| 5 | U3915 |
| 5 | G3916 |
| site_id | AI7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5163 |
| Chain | Residue |
| 5 | A3917 |
| site_id | AI8 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5165 |
| Chain | Residue |
| 5 | U3920 |
| 5 | G4184 |
| site_id | AI9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5166 |
| Chain | Residue |
| 5 | A3923 |
| 5 | C3924 |
| site_id | AJ1 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5167 |
| Chain | Residue |
| 5 | U35 |
| 5 | G4187 |
| 5 | U4188 |
| site_id | AJ2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5168 |
| Chain | Residue |
| 5 | U1735 |
| 5 | A4213 |
| site_id | AJ3 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5169 |
| Chain | Residue |
| 5 | A4214 |
| 5 | C4215 |
| site_id | AJ4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5170 |
| Chain | Residue |
| 5 | G4235 |
| 5 | G4331 |
| 5 | C4332 |
| site_id | AJ5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5171 |
| Chain | Residue |
| 5 | A4239 |
| site_id | AJ6 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5173 |
| Chain | Residue |
| 5 | A4385 |
| 5 | C4386 |
| 5 | A4546 |
| site_id | AJ7 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5174 |
| Chain | Residue |
| 5 | G1633 |
| 5 | G1641 |
| 5 | G4534 |
| site_id | AJ8 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5175 |
| Chain | Residue |
| 5 | A1632 |
| 5 | G1633 |
| 5 | A4535 |
| site_id | AJ9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5176 |
| Chain | Residue |
| 5 | A4533 |
| 5 | G4534 |
| site_id | AK1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5177 |
| Chain | Residue |
| 5 | G4448 |
| site_id | AK2 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5178 |
| Chain | Residue |
| 5 | G4393 |
| 5 | A4394 |
| 5 | C4444 |
| 5 | U4445 |
| site_id | AK3 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5179 |
| Chain | Residue |
| 5 | G1321 |
| 5 | A4394 |
| 5 | U4445 |
| site_id | AK4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5181 |
| Chain | Residue |
| 5 | C4417 |
| site_id | AK5 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5182 |
| Chain | Residue |
| 5 | A1871 |
| 5 | C4444 |
| site_id | AK6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5183 |
| Chain | Residue |
| 5 | A3902 |
| 5 | G4451 |
| site_id | AK7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5184 |
| Chain | Residue |
| 5 | G4451 |
| site_id | AK8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5185 |
| Chain | Residue |
| 5 | A4479 |
| site_id | AK9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5186 |
| Chain | Residue |
| 5 | G2851 |
| 5 | U2852 |
| site_id | AL1 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5187 |
| Chain | Residue |
| 5 | A2850 |
| 5 | G2851 |
| 5 | U2852 |
| 5 | A4496 |
| site_id | AL2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5188 |
| Chain | Residue |
| 5 | C3833 |
| 5 | U4497 |
| site_id | AL3 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5189 |
| Chain | Residue |
| 5 | G4451 |
| 5 | G4522 |
| 5 | U4557 |
| site_id | AL4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5190 |
| Chain | Residue |
| 5 | C4519 |
| 5 | G4520 |
| 5 | U4521 |
| site_id | AL5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5192 |
| Chain | Residue |
| 5 | A4464 |
| site_id | AL6 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5193 |
| Chain | Residue |
| 5 | U4521 |
| 5 | G4522 |
| 5 | A4523 |
| site_id | AL7 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5194 |
| Chain | Residue |
| 5 | G1592 |
| 5 | U4526 |
| site_id | AL8 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5195 |
| Chain | Residue |
| 5 | G4528 |
| 5 | G4529 |
| site_id | AL9 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5196 |
| Chain | Residue |
| 5 | G3815 |
| 5 | C4537 |
| 5 | G4538 |
| site_id | AM1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5197 |
| Chain | Residue |
| 5 | G1592 |
| site_id | AM2 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5198 |
| Chain | Residue |
| 5 | G1595 |
| site_id | AM3 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5199 |
| Chain | Residue |
| 5 | U4601 |
| 5 | G4608 |
| 5 | G4609 |
| site_id | AM4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5201 |
| Chain | Residue |
| 5 | A4705 |
| site_id | AM5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5203 |
| Chain | Residue |
| 5 | G4650 |
| site_id | AM6 |
| Number of Residues | 4 |
| Details | binding site for residue MG 5 5204 |
| Chain | Residue |
| 5 | G4751 |
| 5 | U4752 |
| 5 | U4946 |
| f | LYS52 |
| site_id | AM7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5205 |
| Chain | Residue |
| 5 | G1895 |
| site_id | AM8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5206 |
| Chain | Residue |
| 5 | U1656 |
| site_id | AM9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5207 |
| Chain | Residue |
| 5 | G1680 |
| 5 | G1853 |
| site_id | AN1 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5208 |
| Chain | Residue |
| 5 | C1318 |
| 5 | U1659 |
| a | LYS24 |
| site_id | AN2 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5209 |
| Chain | Residue |
| 5 | C322 |
| 5 | G4355 |
| 5 | G4356 |
| site_id | AN3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5210 |
| Chain | Residue |
| 5 | MG5212 |
| site_id | AN4 |
| Number of Residues | 5 |
| Details | binding site for residue MG 5 5211 |
| Chain | Residue |
| 5 | A353 |
| 5 | U354 |
| 5 | A378 |
| 5 | G379 |
| 5 | MG5216 |
| site_id | AN5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5212 |
| Chain | Residue |
| 5 | MG5210 |
| site_id | AN6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5213 |
| Chain | Residue |
| 5 | G1335 |
| 5 | C2346 |
| site_id | AN7 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5214 |
| Chain | Residue |
| 5 | U4627 |
| 5 | A4665 |
| B | LYS373 |
| site_id | AN8 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 5216 |
| Chain | Residue |
| 5 | A378 |
| 5 | MG5211 |
| site_id | AN9 |
| Number of Residues | 1 |
| Details | binding site for residue MG 5 5217 |
| Chain | Residue |
| 5 | A418 |
| site_id | AO1 |
| Number of Residues | 3 |
| Details | binding site for residue MG 5 5218 |
| Chain | Residue |
| 5 | A4239 |
| 5 | A4281 |
| D | TYR31 |
| site_id | AO2 |
| Number of Residues | 5 |
| Details | binding site for residue MG 5 5219 |
| Chain | Residue |
| 5 | G423 |
| 5 | U424 |
| 8 | A9 |
| 8 | G10 |
| 8 | C11 |
| site_id | AO3 |
| Number of Residues | 2 |
| Details | binding site for residue MG 7 201 |
| Chain | Residue |
| 7 | G41 |
| 7 | A42 |
| site_id | AO4 |
| Number of Residues | 3 |
| Details | binding site for residue MG 7 202 |
| Chain | Residue |
| 7 | G21 |
| 7 | A54 |
| 7 | A55 |
| site_id | AO5 |
| Number of Residues | 5 |
| Details | binding site for residue MG 7 203 |
| Chain | Residue |
| 7 | G21 |
| 7 | U53 |
| 7 | A55 |
| 7 | G56 |
| 7 | C57 |
| site_id | AO6 |
| Number of Residues | 1 |
| Details | binding site for residue MG 7 204 |
| Chain | Residue |
| 7 | G65 |
| site_id | AO7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 7 205 |
| Chain | Residue |
| 7 | A83 |
| site_id | AO8 |
| Number of Residues | 1 |
| Details | binding site for residue MG 8 202 |
| Chain | Residue |
| 8 | A20 |
| site_id | AO9 |
| Number of Residues | 2 |
| Details | binding site for residue MG 8 203 |
| Chain | Residue |
| 8 | G149 |
| 8 | G151 |
| site_id | AP1 |
| Number of Residues | 1 |
| Details | binding site for residue MG P 201 |
| Chain | Residue |
| P | TYR130 |
| site_id | AP2 |
| Number of Residues | 1 |
| Details | binding site for residue MG V 201 |
| Chain | Residue |
| V | ASN50 |
| site_id | AP3 |
| Number of Residues | 4 |
| Details | binding site for residue MG g 201 |
| Chain | Residue |
| 5 | G2584 |
| g | GLY55 |
| g | THR70 |
| g | HIS73 |
| site_id | AP4 |
| Number of Residues | 4 |
| Details | binding site for residue ZN j 101 |
| Chain | Residue |
| j | CYS19 |
| j | CYS22 |
| j | CYS34 |
| j | CYS37 |
| site_id | AP5 |
| Number of Residues | 4 |
| Details | binding site for residue ZN m 201 |
| Chain | Residue |
| m | CYS96 |
| m | CYS99 |
| m | CYS110 |
| m | CYS115 |
| site_id | AP6 |
| Number of Residues | 6 |
| Details | binding site for residue ZN o 201 |
| Chain | Residue |
| o | CYS12 |
| o | LYS14 |
| o | CYS15 |
| o | CYS72 |
| o | CYS77 |
| o | SER79 |
| site_id | AP7 |
| Number of Residues | 4 |
| Details | binding site for residue MG v 301 |
| Chain | Residue |
| v | THR78 |
| v | SER95 |
| v | ASP117 |
| v | GTP302 |
| site_id | AP8 |
| Number of Residues | 21 |
| Details | binding site for residue GTP v 302 |
| Chain | Residue |
| v | LEU72 |
| v | CYS73 |
| v | ASP74 |
| v | SER75 |
| v | GLY76 |
| v | LYS77 |
| v | THR78 |
| v | LEU79 |
| v | THR92 |
| v | GLN93 |
| v | THR94 |
| v | SER95 |
| v | GLY120 |
| v | ASN180 |
| v | LYS181 |
| v | ASP183 |
| v | ILE184 |
| v | SER247 |
| v | ALA248 |
| v | LYS249 |
| v | MG301 |
| site_id | AP9 |
| Number of Residues | 25 |
| Details | binding site for residue GNP x 601 |
| Chain | Residue |
| x | LEU109 |
| x | GLN110 |
| x | GLY111 |
| x | SER112 |
| x | GLY113 |
| x | LYS114 |
| x | THR115 |
| x | THR116 |
| x | LYS120 |
| x | ASP138 |
| x | ARG141 |
| x | GLN147 |
| x | GLY193 |
| x | THR248 |
| x | LYS249 |
| x | ASP251 |
| x | GLY274 |
| x | THR275 |
| x | GLY276 |
| x | GLU277 |
| x | MG602 |
| y | ASN426 |
| y | ARG457 |
| y | MET524 |
| y | GNP701 |
| site_id | AQ1 |
| Number of Residues | 4 |
| Details | binding site for residue MG x 602 |
| Chain | Residue |
| x | THR115 |
| x | ASP138 |
| x | ASP190 |
| x | GNP601 |
| site_id | AQ2 |
| Number of Residues | 23 |
| Details | binding site for residue GNP y 701 |
| Chain | Residue |
| x | GLN110 |
| x | ARG141 |
| x | GNP601 |
| y | ASN426 |
| y | GLY427 |
| y | VAL428 |
| y | GLY429 |
| y | LYS430 |
| y | SER431 |
| y | THR432 |
| y | ASN433 |
| y | LYS436 |
| y | ASP454 |
| y | ARG457 |
| y | GLN463 |
| y | GLY522 |
| y | LYS588 |
| y | ASP590 |
| y | GLY614 |
| y | THR615 |
| y | GLY616 |
| y | GLN617 |
| y | MG702 |
| site_id | AQ3 |
| Number of Residues | 4 |
| Details | binding site for residue MG y 702 |
| Chain | Residue |
| y | SER431 |
| y | ASP454 |
| y | ASP519 |
| y | GNP701 |
Functional Information from PROSITE/UniProt
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVIrqrksyrrk.DGvflyFedNagVI |
| Chain | Residue | Details |
| V | ALA79-ILE105 |
| site_id | PS00050 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLApdydaldV |
| Chain | Residue | Details |
| X | LYS134-VAL149 |
| site_id | PS00051 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L39E Ribosomal protein L39e signature. KTgnkIryNskrRHWRR |
| Chain | Residue | Details |
| l | LYS30-ARG46 |
| site_id | PS00300 |
| Number of Residues | 14 |
| Details | SRP54 SRP54-type proteins GTP-binding domain signature. PIiFIGTGEhIddF |
| Chain | Residue | Details |
| x | PRO269-PHE282 | |
| y | PRO609-LEU622 |
| site_id | PS00358 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLTGQtpVfSkARyT |
| Chain | Residue | Details |
| J | LEU40-THR56 |
| site_id | PS00359 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L11 Ribosomal protein L11 signature. KeIlGTaqSVGcNVdG |
| Chain | Residue | Details |
| 4 | LYS130-GLY145 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsspCHIEMiL |
| Chain | Residue | Details |
| P | ARG126-LEU150 |
| site_id | PS00467 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvE |
| Chain | Residue | Details |
| A | PRO197-GLU208 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FgqdemiDviGvTkGKGykGvtsR |
| Chain | Residue | Details |
| B | PHE211-ARG234 |
| site_id | PS00475 |
| Number of Residues | 32 |
| Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGkLpkqp.ViVkakfFSrrAeekIkgvG |
| Chain | Residue | Details |
| a | LYS110-GLY141 |
| site_id | PS00526 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaSsvlrCGkkkVWLDP |
| Chain | Residue | Details |
| R | GLN7-PRO26 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIRvVRKSIARV |
| Chain | Residue | Details |
| h | LYS43-VAL57 |
| site_id | PS00580 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L32E Ribosomal protein L32e signature. FiRhqsdRyvKIkrn..WRKprG |
| Chain | Residue | Details |
| e | PHE20-GLY40 |
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLrQifNgTfvklnkasinMLriVepYI |
| Chain | Residue | Details |
| F | VAL110-ILE142 |
| site_id | PS00687 |
| Number of Residues | 8 |
| Details | ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. GESSGKNV |
| Chain | Residue | Details |
| C | GLY15-VAL22 |
| site_id | PS00700 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QattVknKdiRkFlDGIYVseK |
| Chain | Residue | Details |
| H | GLN163-LYS184 |
| site_id | PS00709 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkyvlGyKqtLKmiRqGkaKlVIL |
| Chain | Residue | Details |
| c | SER24-LEU48 |
| site_id | PS00783 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPhktkrGQaaldrLkVFdG |
| Chain | Residue | Details |
| O | VAL84-GLY107 |
| site_id | PS00939 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L1E Ribosomal protein L1e signature. NttqKryAIcSALaASAlpalvmsKGH |
| Chain | Residue | Details |
| C | ASN116-HIS142 |
| site_id | PS00993 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTacGKyyrvctLaIiDpG |
| Chain | Residue | Details |
| c | GLU80-GLY100 |
| site_id | PS01073 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24E Ribosomal protein L24e signature. FsGykIyPGhGrrYaRtD |
| Chain | Residue | Details |
| W | PHE8-ASP25 |
| site_id | PS01077 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSfGkRrnkt.HtlCrRCG |
| Chain | Residue | Details |
| j | GLY4-GLY23 |
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmgVPYciIkGKarLG |
| Chain | Residue | Details |
| G | CYS174-GLY191 |
| site_id | PS01104 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFSLeELrvaG |
| Chain | Residue | Details |
| L | ARG71-GLY85 |
| site_id | PS01105 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRaHGnsGmVrAkFrsnLP |
| Chain | Residue | Details |
| f | GLY72-PRO93 |
| site_id | PS01106 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L18E Ribosomal protein L18e signature. KrLfmSRtnRPpLSLsRM |
| Chain | Residue | Details |
| Q | LYS49-MET66 |
| site_id | PS01107 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L27E Ribosomal protein L27e signature. GKNkWFFqkLRF |
| Chain | Residue | Details |
| Z | GLY125-PHE136 |
| site_id | PS01108 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVqVVrGhyKGqqiGkV |
| Chain | Residue | Details |
| Y | ASP52-VAL70 |
| site_id | PS01144 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L31E Ribosomal protein L31e signature. VRIDtrLNkAvWaKG |
| Chain | Residue | Details |
| d | VAL62-GLY76 |
| site_id | PS01145 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_L34E Ribosomal protein L34e signature. TaSnKtrlsRTPGN |
| Chain | Residue | Details |
| g | THR15-ASN28 |
| site_id | PS01170 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_L6E Ribosomal protein L6e signature. NrvPLRRthqkFVIATSt.K |
| Chain | Residue | Details |
| E | ASN178-LYS196 |
| site_id | PS01171 |
| Number of Residues | 26 |
| Details | RIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikgmgtvqk.GmpHkcYhGkTG |
| Chain | Residue | Details |
| T | GLY37-GLY62 |
| site_id | PS01172 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRleC |
| Chain | Residue | Details |
| o | LYS61-CYS72 |
| site_id | PS01190 |
| Number of Residues | 11 |
| Details | RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRaMELLK |
| Chain | Residue | Details |
| i | PRO52-LYS62 |
| site_id | PS01194 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRiRVrRG |
| Chain | Residue | Details |
| N | ASP46-GLY69 |
| site_id | PS01257 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAFGKPqGtvARV |
| Chain | Residue | Details |
| I | ALA108-VAL129 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P16254 |
| Chain | Residue | Details |
| z | SER45 | |
| x | ASP190 | |
| x | THR248 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9UHB9 |
| Chain | Residue | Details |
| u | LYS448 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0000250|UniProtKB:O76094 |
| Chain | Residue | Details |
| r | LYS391 |
