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6FKZ

Crystal structure of zebrafish Sirtuin 5 in complex with 3-(phenylthio)succinyl-CPS1 peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0000035molecular_functionacyl binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0006338biological_processchromatin remodeling
A0006476biological_processprotein deacetylation
A0008270molecular_functionzinc ion binding
A0010566biological_processregulation of ketone biosynthetic process
A0016740molecular_functiontransferase activity
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0034979molecular_functionNAD-dependent protein lysine deacetylase activity
A0036047biological_processpeptidyl-lysine demalonylation
A0036048biological_processprotein desuccinylation
A0036049biological_processpeptidyl-lysine desuccinylation
A0036054molecular_functionprotein-malonyllysine demalonylase activity
A0036055molecular_functionprotein-succinyllysine desuccinylase activity
A0046872molecular_functionmetal ion binding
A0061697molecular_functionprotein-glutaryllysine deglutarylase activity
A0070403molecular_functionNAD+ binding
A1901363molecular_functionheterocyclic compound binding
B0000035molecular_functionacyl binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005829cellular_componentcytosol
B0006338biological_processchromatin remodeling
B0006476biological_processprotein deacetylation
B0008270molecular_functionzinc ion binding
B0010566biological_processregulation of ketone biosynthetic process
B0016740molecular_functiontransferase activity
B0017136molecular_functionNAD-dependent histone deacetylase activity
B0034979molecular_functionNAD-dependent protein lysine deacetylase activity
B0036047biological_processpeptidyl-lysine demalonylation
B0036048biological_processprotein desuccinylation
B0036049biological_processpeptidyl-lysine desuccinylation
B0036054molecular_functionprotein-malonyllysine demalonylase activity
B0036055molecular_functionprotein-succinyllysine desuccinylase activity
B0046872molecular_functionmetal ion binding
B0061697molecular_functionprotein-glutaryllysine deglutarylase activity
B0070403molecular_functionNAD+ binding
B1901363molecular_functionheterocyclic compound binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS162
ACYS165
ACYS203
AARG205
ACYS208

site_idAC2
Number of Residues5
Detailsbinding site for residue GOL A 402
ChainResidue
AGLU204
ACYS177
ALEU200
APRO201
AARG202

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS162
BCYS165
BCYS203
BCYS208

site_idAC4
Number of Residues12
Detailsbinding site for residue EPE B 402
ChainResidue
ATHR229
AGLU232
BALA82
BTYR98
BARG101
BHIS154
BVAL217
BTRP218
BPHE219
BGLU221
BLEU223
BTYR251

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236
ChainResidueDetails
AHIS154
BHIS154

site_idSWS_FT_FI2
Number of Residues22
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03160
ChainResidueDetails
AARG101
AGLN136
ACYS162
ACYS165
ACYS203
ACYS208
AGLY245
AASN271
ACYS289
BGLY54
BTYR98
BARG101
BGLN136
BCYS162
BCYS165
BCYS203
BCYS208
BGLY245
BASN271
BCYS289
AGLY54
ATYR98

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PDB entries from 2024-05-15

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