6F5R

Crystal Structure of KDM4D with GF028 ligand

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 401

Chain	Residue
A	CYS238
A	HIS244
A	CYS310
A	CYS312

---

site_id	AC2
Number of Residues	2
Details	binding site for residue CL A 402

Chain	Residue
A	ASN128
A	LYS186

---

site_id	AC3
Number of Residues	4
Details	binding site for residue EDO A 403

Chain	Residue
A	ASN128
A	ARG123
A	LYS124
A	LYS127

---

site_id	AC4
Number of Residues	7
Details	binding site for residue EDO A 404

Chain	Residue
A	LYS150
A	GLN151
A	TRP152
A	ASN153
A	HIS156
A	HOH591
A	HOH709

---

site_id	AC5
Number of Residues	4
Details	binding site for residue EDO A 405

Chain	Residue
A	THR252
A	LYS255
A	ARG263
A	HOH663

---

site_id	AC6
Number of Residues	5
Details	binding site for residue EDO A 406

Chain	Residue
A	SER80
A	THR87
A	LYS305
A	HOH522
A	HOH674

---

site_id	AC7
Number of Residues	5
Details	binding site for residue EDO A 407

Chain	Residue
A	PHE118
A	GLU122
A	ARG263
A	THR265
A	EDO411

---

site_id	AC8
Number of Residues	3
Details	binding site for residue EDO A 408

Chain	Residue
A	ILE20
A	HOH603
A	HOH673

---

site_id	AC9
Number of Residues	4
Details	binding site for residue EDO A 409

Chain	Residue
A	TYR181
A	ALA292
A	CQZ415
A	HOH504

---

site_id	AD1
Number of Residues	2
Details	binding site for residue EDO A 410

Chain	Residue
A	GLU27
A	HOH550

---

site_id	AD2
Number of Residues	4
Details	binding site for residue EDO A 411

Chain	Residue
A	ILE264
A	THR265
A	EDO407
A	HOH727

---

site_id	AD3
Number of Residues	6
Details	binding site for residue NI A 412

Chain	Residue
A	HIS192
A	GLU194
A	HIS280
A	CQZ415
A	HOH504
A	HOH618

---

site_id	AD4
Number of Residues	5
Details	binding site for residue SO4 A 413

Chain	Residue
A	ASP64
A	ASN65
A	ILE66
A	SER67
A	ARG102

---

site_id	AD5
Number of Residues	5
Details	binding site for residue SO4 A 414

Chain	Residue
A	ARG102
A	HIS103
A	ASN106
A	HOH502
A	HOH666

---

site_id	AD6
Number of Residues	13
Details	binding site for residue CQZ A 415

Chain	Residue
A	TYR136
A	PHE189
A	ALA190
A	HIS192
A	LYS210
A	LYS245
A	HIS280
A	EDO409
A	NI412
A	HOH504
A	HOH533
A	HOH618
A	HOH639

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	42
Details	Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	166
Details	Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	2
Details	Modified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---