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6F5R

Crystal Structure of KDM4D with GF028 ligand

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 402
ChainResidue
AASN128
ALYS186

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 403
ChainResidue
AASN128
AARG123
ALYS124
ALYS127

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH591
AHOH709

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR252
ALYS255
AARG263
AHOH663

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
ASER80
ATHR87
ALYS305
AHOH522
AHOH674

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 407
ChainResidue
APHE118
AGLU122
AARG263
ATHR265
AEDO411

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 408
ChainResidue
AILE20
AHOH603
AHOH673

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
ATYR181
AALA292
ACQZ415
AHOH504

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO A 410
ChainResidue
AGLU27
AHOH550

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO A 411
ChainResidue
AILE264
ATHR265
AEDO407
AHOH727

site_idAD3
Number of Residues6
Detailsbinding site for residue NI A 412
ChainResidue
AHIS192
AGLU194
AHIS280
ACQZ415
AHOH504
AHOH618

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 A 413
ChainResidue
AASP64
AASN65
AILE66
ASER67
AARG102

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 A 414
ChainResidue
AARG102
AHIS103
AASN106
AHOH502
AHOH666

site_idAD6
Number of Residues13
Detailsbinding site for residue CQZ A 415
ChainResidue
ATYR136
APHE189
AALA190
AHIS192
ALYS210
ALYS245
AHIS280
AEDO409
ANI412
AHOH504
AHOH533
AHOH618
AHOH639

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

222624

PDB entries from 2024-07-17

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