6F5R
Crystal Structure of KDM4D with GF028 ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-31 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 72.149, 72.149, 152.392 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.412 - 1.607 |
R-factor | 0.168 |
Rwork | 0.167 |
R-free | 0.19230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ets |
RMSD bond length | 0.012 |
RMSD bond angle | 1.106 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.378 | 48.378 | 1.700 |
High resolution limit [Å] | 1.600 | 4.790 | 1.600 |
Rmerge | 0.085 | 0.030 | 2.345 |
Rmeas | 0.094 | 0.033 | 2.594 |
Number of reflections | 99966 | 3774 | 15546 |
<I/σ(I)> | 12.54 | 50.42 | 0.64 |
Completeness [%] | 99.2 | 99.7 | 95.6 |
Redundancy | 5.643 | 6.346 | 5.431 |
CC(1/2) | 0.999 | 0.999 | 0.215 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 293 | 100mM HEPES, 180mM ammonium sulphate, 24% PEG 3350 |