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6EW0

Cryo-EM structure of GDP-microtubule co-polymerised with doublecortin and supplemented with Taxol

Functional Information from GO Data
ChainGOidnamespacecontents
A0000226biological_processmicrotubule cytoskeleton organization
A0000278biological_processmitotic cell cycle
A0003924molecular_functionGTPase activity
A0005200molecular_functionstructural constituent of cytoskeleton
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0007017biological_processmicrotubule-based process
A0015630cellular_componentmicrotubule cytoskeleton
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0000226biological_processmicrotubule cytoskeleton organization
B0000278biological_processmitotic cell cycle
B0003924molecular_functionGTPase activity
B0005200molecular_functionstructural constituent of cytoskeleton
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0007017biological_processmicrotubule-based process
B0046872molecular_functionmetal ion binding
C0000226biological_processmicrotubule cytoskeleton organization
C0000278biological_processmitotic cell cycle
C0003924molecular_functionGTPase activity
C0005200molecular_functionstructural constituent of cytoskeleton
C0005525molecular_functionGTP binding
C0005737cellular_componentcytoplasm
C0005856cellular_componentcytoskeleton
C0005874cellular_componentmicrotubule
C0007017biological_processmicrotubule-based process
C0015630cellular_componentmicrotubule cytoskeleton
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
D0000226biological_processmicrotubule cytoskeleton organization
D0000278biological_processmitotic cell cycle
D0003924molecular_functionGTPase activity
D0005200molecular_functionstructural constituent of cytoskeleton
D0005515molecular_functionprotein binding
D0005525molecular_functionGTP binding
D0005737cellular_componentcytoplasm
D0005856cellular_componentcytoskeleton
D0005874cellular_componentmicrotubule
D0007017biological_processmicrotubule-based process
D0046872molecular_functionmetal ion binding
E0000226biological_processmicrotubule cytoskeleton organization
E0000278biological_processmitotic cell cycle
E0003924molecular_functionGTPase activity
E0005200molecular_functionstructural constituent of cytoskeleton
E0005525molecular_functionGTP binding
E0005737cellular_componentcytoplasm
E0005856cellular_componentcytoskeleton
E0005874cellular_componentmicrotubule
E0007017biological_processmicrotubule-based process
E0015630cellular_componentmicrotubule cytoskeleton
E0016787molecular_functionhydrolase activity
E0046872molecular_functionmetal ion binding
F0000226biological_processmicrotubule cytoskeleton organization
F0000278biological_processmitotic cell cycle
F0003924molecular_functionGTPase activity
F0005200molecular_functionstructural constituent of cytoskeleton
F0005515molecular_functionprotein binding
F0005525molecular_functionGTP binding
F0005737cellular_componentcytoplasm
F0005856cellular_componentcytoskeleton
F0005874cellular_componentmicrotubule
F0007017biological_processmicrotubule-based process
F0046872molecular_functionmetal ion binding
G0000226biological_processmicrotubule cytoskeleton organization
G0000278biological_processmitotic cell cycle
G0003924molecular_functionGTPase activity
G0005200molecular_functionstructural constituent of cytoskeleton
G0005515molecular_functionprotein binding
G0005525molecular_functionGTP binding
G0005737cellular_componentcytoplasm
G0005856cellular_componentcytoskeleton
G0005874cellular_componentmicrotubule
G0007017biological_processmicrotubule-based process
G0046872molecular_functionmetal ion binding
H0000226biological_processmicrotubule cytoskeleton organization
H0000278biological_processmitotic cell cycle
H0003924molecular_functionGTPase activity
H0005200molecular_functionstructural constituent of cytoskeleton
H0005515molecular_functionprotein binding
H0005525molecular_functionGTP binding
H0005737cellular_componentcytoplasm
H0005856cellular_componentcytoskeleton
H0005874cellular_componentmicrotubule
H0007017biological_processmicrotubule-based process
H0046872molecular_functionmetal ion binding
I0000226biological_processmicrotubule cytoskeleton organization
I0000278biological_processmitotic cell cycle
I0003924molecular_functionGTPase activity
I0005200molecular_functionstructural constituent of cytoskeleton
I0005515molecular_functionprotein binding
I0005525molecular_functionGTP binding
I0005737cellular_componentcytoplasm
I0005856cellular_componentcytoskeleton
I0005874cellular_componentmicrotubule
I0007017biological_processmicrotubule-based process
I0046872molecular_functionmetal ion binding
J0000226biological_processmicrotubule cytoskeleton organization
J0000278biological_processmitotic cell cycle
J0003924molecular_functionGTPase activity
J0005200molecular_functionstructural constituent of cytoskeleton
J0005525molecular_functionGTP binding
J0005737cellular_componentcytoplasm
J0005856cellular_componentcytoskeleton
J0005874cellular_componentmicrotubule
J0007017biological_processmicrotubule-based process
J0015630cellular_componentmicrotubule cytoskeleton
J0016787molecular_functionhydrolase activity
J0046872molecular_functionmetal ion binding
K0000226biological_processmicrotubule cytoskeleton organization
K0000278biological_processmitotic cell cycle
K0003924molecular_functionGTPase activity
K0005200molecular_functionstructural constituent of cytoskeleton
K0005525molecular_functionGTP binding
K0005737cellular_componentcytoplasm
K0005856cellular_componentcytoskeleton
K0005874cellular_componentmicrotubule
K0007017biological_processmicrotubule-based process
K0015630cellular_componentmicrotubule cytoskeleton
K0016787molecular_functionhydrolase activity
K0046872molecular_functionmetal ion binding
L0000226biological_processmicrotubule cytoskeleton organization
L0000278biological_processmitotic cell cycle
L0003924molecular_functionGTPase activity
L0005200molecular_functionstructural constituent of cytoskeleton
L0005525molecular_functionGTP binding
L0005737cellular_componentcytoplasm
L0005856cellular_componentcytoskeleton
L0005874cellular_componentmicrotubule
L0007017biological_processmicrotubule-based process
L0015630cellular_componentmicrotubule cytoskeleton
L0016787molecular_functionhydrolase activity
L0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue GTP E 501
ChainResidue
EGLY10
EGLY143
EGLY144
ETHR145
EGLY146
EILE171
EGLU183
EASN206
ETYR224
EASN228
EMG502
EGLN11
EALA12
EGLN15
EGLU71
EASP98
EALA99
EALA100
ESER140

site_idAC2
Number of Residues3
Detailsbinding site for residue MG E 502
ChainResidue
EGLN11
EGLU71
EGTP501

site_idAC3
Number of Residues14
Detailsbinding site for residue GDP F 501
ChainResidue
ELEU248
FGLY10
FGLN11
FCYS12
FGLN15
FSER138
FGLY141
FGLY142
FTHR143
FGLY144
FASP177
FASN204
FTYR222
FASN226

site_idAC4
Number of Residues15
Detailsbinding site for residue TA1 F 502
ChainResidue
FVAL23
FASP26
FGLU27
FLEU217
FASP224
FHIS227
FALA231
FSER234
FLEU273
FTHR274
FARG276
FGLN279
FPRO358
FARG359
FLEU361

site_idAC5
Number of Residues20
Detailsbinding site for residue GTP J 501
ChainResidue
FLEU246
FLYS252
JGLY10
JGLN11
JALA12
JGLN15
JGLU71
JASP98
JALA99
JALA100
JSER140
JGLY143
JGLY144
JTHR145
JGLY146
JGLU183
JASN206
JTYR224
JASN228
JMG502

site_idAC6
Number of Residues3
Detailsbinding site for residue MG J 502
ChainResidue
JGLN11
JGLU71
JGTP501

site_idAC7
Number of Residues19
Detailsbinding site for residue GTP C 501
ChainResidue
CGLY10
CGLN11
CALA12
CGLN15
CGLU71
CASP98
CALA99
CALA100
CASN101
CSER140
CGLY143
CGLY144
CTHR145
CGLY146
CGLU183
CASN206
CTYR224
CASN228
CMG502

site_idAC8
Number of Residues3
Detailsbinding site for residue MG C 502
ChainResidue
CGLN11
CGLU71
CGTP501

site_idAC9
Number of Residues19
Detailsbinding site for residue GTP L 501
ChainResidue
LGLN15
LGLU71
LASP98
LALA99
LALA100
LASN101
LSER140
LGLY143
LGLY144
LTHR145
LGLY146
LGLU183
LASN206
LTYR224
LASN228
LMG502
LGLY10
LGLN11
LALA12

site_idAD1
Number of Residues2
Detailsbinding site for residue MG L 502
ChainResidue
LGLU71
LGTP501

site_idAD2
Number of Residues20
Detailsbinding site for residue GTP A 501
ChainResidue
AGLY10
AGLN11
AALA12
AGLN15
AGLU71
AASP98
AALA99
AALA100
AASN101
ASER140
AGLY143
AGLY144
ATHR145
AGLY146
AILE171
AGLU183
AASN206
ATYR224
AASN228
AMG502

site_idAD3
Number of Residues2
Detailsbinding site for residue MG A 502
ChainResidue
AGLU71
AGTP501

site_idAD4
Number of Residues19
Detailsbinding site for residue GTP K 501
ChainResidue
BLYS252
KGLN11
KALA12
KGLN15
KASP98
KALA99
KALA100
KASN101
KSER140
KGLY143
KGLY144
KTHR145
KGLY146
KTHR179
KGLU183
KASN206
KTYR224
KASN228
KMG502

site_idAD5
Number of Residues3
Detailsbinding site for residue MG K 502
ChainResidue
KGLN11
KGLU71
KGTP501

site_idAD6
Number of Residues14
Detailsbinding site for residue TA1 G 501
ChainResidue
GASP26
GGLU27
GLEU215
GLEU217
GHIS227
GLEU228
GSER234
GLEU273
GTHR274
GARG276
GGLN279
GPRO358
GARG359
GLEU361

site_idAD7
Number of Residues13
Detailsbinding site for residue GDP G 502
ChainResidue
GGLY10
GGLN11
GCYS12
GGLN15
GSER138
GGLY141
GGLY142
GTHR143
GGLY144
GASP177
GASN204
GTYR222
GASN226

site_idAD8
Number of Residues15
Detailsbinding site for residue TA1 D 501
ChainResidue
DASP26
DGLU27
DLEU215
DLEU217
DASP224
DHIS227
DLEU228
DSER234
DLEU273
DTHR274
DARG276
DGLN279
DPRO358
DARG359
DLEU361

site_idAD9
Number of Residues14
Detailsbinding site for residue GDP D 502
ChainResidue
CLEU248
DGLY10
DGLN11
DCYS12
DGLN15
DSER138
DGLY141
DGLY142
DTHR143
DGLY144
DASP177
DASN204
DTYR222
DASN226

site_idAE1
Number of Residues14
Detailsbinding site for residue TA1 I 501
ChainResidue
IASP26
IGLU27
ILEU215
ILEU217
IHIS227
ILEU228
ISER234
ILEU273
ITHR274
IARG276
IGLN279
IPRO358
IARG359
ILEU361

site_idAE2
Number of Residues13
Detailsbinding site for residue GDP I 502
ChainResidue
IGLY10
IGLN11
ICYS12
IGLN15
ISER138
IGLY141
IGLY142
ITHR143
IGLY144
IASP177
IASN204
ITYR222
IASN226

site_idAE3
Number of Residues16
Detailsbinding site for residue TA1 B 501
ChainResidue
BVAL23
BASP26
BGLU27
BLEU215
BLEU217
BASP224
BHIS227
BLEU228
BSER234
BLEU273
BTHR274
BARG276
BGLN279
BPRO358
BARG359
BLEU361

site_idAE4
Number of Residues14
Detailsbinding site for residue GDP B 502
ChainResidue
ALEU248
BGLY10
BGLN11
BCYS12
BGLN15
BSER138
BGLY141
BGLY142
BTHR143
BGLY144
BASP177
BASN204
BTYR222
BASN226

site_idAE5
Number of Residues15
Detailsbinding site for residue TA1 H 501
ChainResidue
HVAL23
HASP26
HGLU27
HLEU215
HLEU217
HHIS227
HLEU228
HSER234
HLEU273
HTHR274
HARG276
HGLN279
HPRO358
HARG359
HLEU361

site_idAE6
Number of Residues13
Detailsbinding site for residue GDP H 502
ChainResidue
HGLY10
HGLN11
HCYS12
HGLN15
HSER138
HGLY141
HGLY142
HTHR143
HGLY144
HASP177
HASN204
HTYR222
HASN226

Functional Information from PROSITE/UniProt
site_idPS00227
Number of Residues7
DetailsTUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG
ChainResidueDetails
FGLY140-GLY146
EGLY142-GLY148

site_idPS00228
Number of Residues4
DetailsTUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI
ChainResidueDetails
FMET1-ILE4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q13509
ChainResidueDetails
FGLN11
GGLY142
GTHR143
GGLY144
GASN204
GASN226
DGLN11
DSER138
DGLY142
DTHR143
DGLY144
FSER138
DASN204
DASN226
IGLN11
ISER138
IGLY142
ITHR143
IGLY144
IASN204
IASN226
BGLN11
FGLY142
BSER138
BGLY142
BTHR143
BGLY144
BASN204
BASN226
HGLN11
HSER138
HGLY142
HTHR143
FTHR143
HGLY144
HASN204
HASN226
FGLY144
FASN204
FASN226
GGLN11
GSER138

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P68363
ChainResidueDetails
FGLU69
JGLU71
JSER140
JGLY144
JTHR145
JTHR179
JASN206
JASN228
CGLN11
CGLU71
CSER140
GGLU69
CGLY144
CTHR145
CTHR179
CASN206
CASN228
LGLN11
LGLU71
LSER140
LGLY144
LTHR145
DGLU69
LTHR179
LASN206
LASN228
AGLN11
AGLU71
ASER140
AGLY144
ATHR145
ATHR179
AASN206
IGLU69
AASN228
KGLN11
KGLU71
KSER140
KGLY144
KTHR145
KTHR179
KASN206
KASN228
BGLU69
HGLU69
EASN206
EASN228
JGLN11

site_idSWS_FT_FI3
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P99024
ChainResidueDetails
FSER40
GSER40
DSER40
ISER40
BSER40
HSER40

site_idSWS_FT_FI4
Number of Residues6
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P99024
ChainResidueDetails
FLYS58
GLYS58
DLYS58
ILYS58
BLYS58
HLYS58

site_idSWS_FT_FI5
Number of Residues6
DetailsMOD_RES: Phosphoserine; by CDK1 => ECO:0000250|UniProtKB:Q13885
ChainResidueDetails
FSER172
ASER232
KSER48
KSER232
GSER172
DSER172
ISER172
BSER172
HSER172
LSER48
LSER232
ASER48

site_idSWS_FT_FI6
Number of Residues12
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
FTHR285
BTHR290
HTHR285
HTHR290
FTHR290
GTHR285
GTHR290
DTHR285
DTHR290
ITHR285
ITHR290
BTHR285

site_idSWS_FT_FI7
Number of Residues6
DetailsMOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
FARG318
GARG318
DARG318
IARG318
BARG318
HARG318

site_idSWS_FT_FI8
Number of Residues6
DetailsMOD_RES: 5-glutamyl polyglutamate => ECO:0000250|UniProtKB:Q2T9S0
ChainResidueDetails
FGLU438
GGLU438
DGLU438
IGLU438
BGLU438
HGLU438

site_idSWS_FT_FI9
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
FLYS58
GLYS58
DLYS58
ILYS58
BLYS58
HLYS58

site_idSWS_FT_FI10
Number of Residues12
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
EGLU445
BLYS324
HLYS324
FLYS324
CGLU445
GLYS324
AGLU445
DLYS324
ILYS324

site_idSWS_FT_FI11
Number of Residues6
DetailsMOD_RES: 3'-nitrotyrosine => ECO:0000250|UniProtKB:Q71U36
ChainResidueDetails
ETYR451
JTYR451
CTYR451
LTYR451
ATYR451
KTYR451

site_idSWS_FT_FI12
Number of Residues18
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P68363
ChainResidueDetails
ELYS326
LLYS326
LLYS370
ALYS326
ALYS370
KLYS326
KLYS370
ELYS370
JLYS326
JLYS370
CLYS326
CLYS370

224572

PDB entries from 2024-09-04

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