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6ETS

Crystal structure of KDM4D with tetrazolhydrazide compound 1

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AI1L416
AHOH738

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
AASN17
AASN262
AHOH630
AHOH649
AHOH829
AHOH829

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 404
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH726

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH657
AHOH680

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 406
ChainResidue
ATHR252
ALYS255
AARG263
AEDO409

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 407
ChainResidue
APHE118
AGLU122
AARG263
ATHR265
AHOH629

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
ALYS109
AGLN111
APRO113
AASN132
ATRP185
ALYS186
AHOH514

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 409
ChainResidue
AGLU122
AARG123
ATRP126
AEDO406
AHOH572
AHOH603
AHOH623

site_idAD1
Number of Residues9
Detailsbinding site for residue EDO A 410
ChainResidue
ATYR179
ATYR181
AGLU194
ASER200
AALA292
AASN294
AI1L416
AHOH738
AHOH808

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO A 411
ChainResidue
APHE31
AASP32
AGLY158
APHE295
AALA296
AHOH507

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO A 412
ChainResidue
AGLU27
ATYR37
AHOH521
AHOH864

site_idAD4
Number of Residues7
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG60
ATHR62
AASP64
AASN65
AHOH578
AHOH597
AHOH801

site_idAD5
Number of Residues12
Detailsbinding site for residue SO4 A 414
ChainResidue
AMET19
AILE20
ALYS255
AHOH541
AHOH665
AHOH770
AHOH799
AHOH812
AHOH856
AHOH894
AHOH919
AHOH935

site_idAD6
Number of Residues6
Detailsbinding site for residue SO4 A 415
ChainResidue
AARG102
AHIS103
AASN106
AHOH504
AHOH513
AHOH565

site_idAD7
Number of Residues15
Detailsbinding site for residue I1L A 416
ChainResidue
AASN202
ALYS210
ATRP212
AHIS280
ANI402
AEDO410
AHOH538
AHOH642
AHOH738
AHOH817
ATYR136
APHE189
AHIS192
AGLU194
ASER200

site_idAD8
Number of Residues2
Detailsbinding site for residue CL A 417
ChainResidue
AASN128
ALYS186

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-10-09

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