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6ETS

Crystal structure of KDM4D with tetrazolhydrazide compound 1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lysine-specific demethylase 4Dpolymer34139334.61UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
4D
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
5E, F, G, H, I...
(A)
1,2-ETHANEDIOLnon-polymer62.19Chemie (EDO)
6N, O, P
(A)
SULFATE IONnon-polymer96.13Chemie (SO4)
7Q
(A)
[2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoylamino]azaniumnon-polymer143.11Chemie (I1L)
8R
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
9S
(A)
waterwater18.0459Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight39334.6
Non-Polymers*Number of molecules17
Total formula weight1172.5
All*Total formula weight40507.1
*Water molecules are not included.

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PDB entries from 2024-11-13

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