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6EKK

Crystal structure of GEF domain of DENND 1A in complex with Rab GTPase Rab35-GDP bound state.

Functional Information from GO Data
ChainGOidnamespacecontents
A0005085molecular_functionguanyl-nucleotide exchange factor activity
B0005085molecular_functionguanyl-nucleotide exchange factor activity
C0003924molecular_functionGTPase activity
C0005525molecular_functionGTP binding
D0003924molecular_functionGTPase activity
D0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue SO4 A 401
ChainResidue
ALYS6
AGLN7
AASN8

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 402
ChainResidue
AASP237
CPHE45
CGLN60

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 403
ChainResidue
ATYR222
ATRP223
AARG4
AGLN82
AALA215

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ATYR110
AARG170
AASN171
AGLU174
ASER205
ATHR208
AHOH564

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 405
ChainResidue
AASN171
AHIS212
AHOH585
AHOH638

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 B 401
ChainResidue
BASN70
BASN114
BHOH525

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 B 402
ChainResidue
BLYS6
BGLN7
BASN8
BLYS81

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 B 403
ChainResidue
BGLU45
BVAL46
BTHR49
BARG83
DTHR39
DTHR40

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO B 404
ChainResidue
BGLN82
BALA215
BTYR222
BTRP223
BTYR227

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO B 405
ChainResidue
ATHR272
BARG123

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO B 406
ChainResidue
BASN70
BTYR110
BARG170
BASN171
BSER205
BTHR208
BHOH571

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO B 407
ChainResidue
BPHE337
BGLU339
BLYS365
BHOH526
BHOH572

site_idAD4
Number of Residues3
Detailsbinding site for residue SO4 C 201
ChainResidue
CLYS100
CHIS104
CHOH343

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 C 202
ChainResidue
CASN31
CTHR32
CPHE33
CHOH374
CHOH381

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO C 203
ChainResidue
AHOH634
CPHE33
CSER36

site_idAD7
Number of Residues15
Detailsbinding site for residue GDP C 204
ChainResidue
CGLY18
CVAL19
CGLY20
CLYS21
CSER22
CSER23
CASN120
CLYS121
CASP123
CSER150
CALA151
CLYS152
CHOH306
CHOH312
CHOH376

site_idAD8
Number of Residues5
Detailsbinding site for residue SO4 D 201
ChainResidue
DCYS114
DARG115
DGLY143
DILE144
DHOH322

site_idAD9
Number of Residues5
Detailsbinding site for residue SO4 D 202
ChainResidue
BILE78
DSER36
DTHR39
DGDP203
DHOH371

site_idAE1
Number of Residues19
Detailsbinding site for residue GDP D 203
ChainResidue
DSER150
DALA151
DLYS152
DSO4202
DHOH312
DHOH321
DHOH333
DHOH384
DHOH402
DHOH410
DGLY18
DVAL19
DGLY20
DLYS21
DSER22
DSER23
DASN120
DLYS121
DASP123

Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. LLIiGDSGVGKssL
ChainResidueDetails
CLEU11-LEU24

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P62820
ChainResidueDetails
CGLY15
DSER150
CPHE33
CASP63
CASN120
CSER150
DGLY15
DPHE33
DASP63
DASN120

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphothreonine; by LRRK2 => ECO:0000269|PubMed:29125462, ECO:0007744|PubMed:23186163
ChainResidueDetails
CTHR72
DTHR72

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: O-(2-cholinephosphoryl)serine => ECO:0000305|PubMed:21822290, ECO:0000305|PubMed:22307087
ChainResidueDetails
CSER75
DSER75

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: O-AMP-tyrosine => ECO:0000305|PubMed:21822290
ChainResidueDetails
CTYR77
DTYR77

221371

PDB entries from 2024-06-19

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