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6EKK

Crystal structure of GEF domain of DENND 1A in complex with Rab GTPase Rab35-GDP bound state.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-13
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9686
Spacegroup nameP 1
Unit cell lengths55.700, 67.990, 101.710
Unit cell angles80.50, 76.80, 67.06
Refinement procedure
Resolution50.452 - 1.820
R-factor0.1954
Rwork0.194
R-free0.23230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tw8
RMSD bond length0.008
RMSD bond angle1.104
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwareMOLREP
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.4521.870
High resolution limit [Å]1.8201.820
Number of reflections115286
<I/σ(I)>8.5
Completeness [%]95.7
Redundancy3.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.527725%PEG3350, 0.2M AMS, 0.1M Bis-Tris pH 5.5

221716

PDB entries from 2024-06-26

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