6DWE
Crystal structure of tryptophan synthase from M. tuberculosis - aminoacrylate- and BRD0059-bound form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000162 | biological_process | tryptophan biosynthetic process |
A | 0004834 | molecular_function | tryptophan synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0006568 | biological_process | tryptophan metabolic process |
A | 0016829 | molecular_function | lyase activity |
B | 0000162 | biological_process | tryptophan biosynthetic process |
B | 0004834 | molecular_function | tryptophan synthase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006568 | biological_process | tryptophan metabolic process |
B | 0016829 | molecular_function | lyase activity |
B | 1901605 | biological_process | alpha-amino acid metabolic process |
C | 0000162 | biological_process | tryptophan biosynthetic process |
C | 0004834 | molecular_function | tryptophan synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0005886 | cellular_component | plasma membrane |
C | 0006568 | biological_process | tryptophan metabolic process |
C | 0016829 | molecular_function | lyase activity |
D | 0000162 | biological_process | tryptophan biosynthetic process |
D | 0004834 | molecular_function | tryptophan synthase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006568 | biological_process | tryptophan metabolic process |
D | 0016829 | molecular_function | lyase activity |
D | 1901605 | biological_process | alpha-amino acid metabolic process |
E | 0000162 | biological_process | tryptophan biosynthetic process |
E | 0004834 | molecular_function | tryptophan synthase activity |
E | 0005829 | cellular_component | cytosol |
E | 0005886 | cellular_component | plasma membrane |
E | 0006568 | biological_process | tryptophan metabolic process |
E | 0016829 | molecular_function | lyase activity |
F | 0000162 | biological_process | tryptophan biosynthetic process |
F | 0004834 | molecular_function | tryptophan synthase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006568 | biological_process | tryptophan metabolic process |
F | 0016829 | molecular_function | lyase activity |
F | 1901605 | biological_process | alpha-amino acid metabolic process |
G | 0000162 | biological_process | tryptophan biosynthetic process |
G | 0004834 | molecular_function | tryptophan synthase activity |
G | 0005829 | cellular_component | cytosol |
G | 0005886 | cellular_component | plasma membrane |
G | 0006568 | biological_process | tryptophan metabolic process |
G | 0016829 | molecular_function | lyase activity |
H | 0000162 | biological_process | tryptophan biosynthetic process |
H | 0004834 | molecular_function | tryptophan synthase activity |
H | 0005737 | cellular_component | cytoplasm |
H | 0006568 | biological_process | tryptophan metabolic process |
H | 0016829 | molecular_function | lyase activity |
H | 1901605 | biological_process | alpha-amino acid metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue MLI A 301 |
Chain | Residue |
A | TYR181 |
A | GLY217 |
A | LEU218 |
A | GLY219 |
A | GLY239 |
A | SER240 |
A | FMT302 |
A | HOH403 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue FMT A 302 |
Chain | Residue |
A | GLU57 |
A | TYR181 |
A | ILE237 |
A | MLI301 |
A | TYR30 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue FMT A 303 |
Chain | Residue |
A | MET67 |
A | MET106 |
site_id | AC4 |
Number of Residues | 19 |
Details | binding site for residue P1T B 501 |
Chain | Residue |
B | HIS100 |
B | LYS101 |
B | THR124 |
B | GLY125 |
B | ALA126 |
B | GLY127 |
B | GLN128 |
B | HIS129 |
B | THR204 |
B | GLY246 |
B | GLY247 |
B | GLY248 |
B | SER249 |
B | ASN250 |
B | GLY317 |
B | GLU364 |
B | SER390 |
B | HOH606 |
B | HOH622 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue CS B 502 |
Chain | Residue |
B | GLY246 |
B | ALA282 |
B | THR284 |
B | TYR320 |
B | GLY322 |
B | HOH621 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue CS B 503 |
Chain | Residue |
B | GLY67 |
B | PRO69 |
D | GLY67 |
D | PRO69 |
H | GLN52 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue CS B 504 |
Chain | Residue |
B | LYS402 |
B | TRP403 |
H | LYS402 |
H | TRP403 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue FMT B 505 |
Chain | Residue |
B | LYS47 |
B | GLU48 |
B | ARG114 |
B | HOH607 |
site_id | AC9 |
Number of Residues | 2 |
Details | binding site for residue FMT B 506 |
Chain | Residue |
B | ARG355 |
D | LEU165 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue FMT B 507 |
Chain | Residue |
B | ARG77 |
B | GLN80 |
F | ARG119 |
F | VAL145 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue FMT B 508 |
Chain | Residue |
B | VAL160 |
B | ARG164 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue FMT B 509 |
Chain | Residue |
B | GLU48 |
B | SER51 |
B | ARG114 |
B | HOH694 |
F | VAL228 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue FMT B 510 |
Chain | Residue |
B | SER344 |
B | GLU345 |
B | ASP348 |
site_id | AD5 |
Number of Residues | 14 |
Details | binding site for residue HDJ B 511 |
Chain | Residue |
A | ASP64 |
A | MET67 |
A | TYR108 |
B | LEU34 |
B | ILE184 |
B | ASN185 |
B | PHE188 |
B | TYR200 |
B | PHE202 |
B | PRO208 |
B | PHE211 |
B | HIS294 |
B | GLY295 |
B | ACT512 |
site_id | AD6 |
Number of Residues | 9 |
Details | binding site for residue ACT B 512 |
Chain | Residue |
A | TYR62 |
A | TYR108 |
A | TRP109 |
A | ASN110 |
A | ASP136 |
B | ALA292 |
B | PHE293 |
B | HDJ511 |
B | HOH670 |
site_id | AD7 |
Number of Residues | 9 |
Details | binding site for residue MLI G 301 |
Chain | Residue |
G | HOH401 |
G | HOH419 |
G | TYR181 |
G | GLY217 |
G | LEU218 |
G | GLY219 |
G | GLY239 |
G | SER240 |
G | FMT303 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue FMT G 302 |
Chain | Residue |
A | ALA126 |
A | HOH429 |
G | ARG223 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue FMT G 303 |
Chain | Residue |
G | TYR30 |
G | GLU57 |
G | TYR181 |
G | ILE237 |
G | MLI301 |
site_id | AE1 |
Number of Residues | 3 |
Details | binding site for residue FMT G 304 |
Chain | Residue |
G | TYR35 |
G | THR71 |
G | ALA75 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue FMT G 305 |
Chain | Residue |
G | ASP211 |
site_id | AE3 |
Number of Residues | 18 |
Details | binding site for residue P1T H 501 |
Chain | Residue |
H | HIS100 |
H | LYS101 |
H | THR124 |
H | GLY125 |
H | ALA126 |
H | GLY127 |
H | GLN128 |
H | HIS129 |
H | THR204 |
H | GLY246 |
H | GLY247 |
H | GLY248 |
H | SER249 |
H | ASN250 |
H | GLY317 |
H | GLU364 |
H | SER390 |
H | HOH649 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue CS H 502 |
Chain | Residue |
H | GLY246 |
H | ALA282 |
H | THR284 |
H | TYR320 |
H | GLY322 |
site_id | AE5 |
Number of Residues | 5 |
Details | binding site for residue FMT H 503 |
Chain | Residue |
D | ARG119 |
D | VAL145 |
H | ARG77 |
H | GLN80 |
H | HOH672 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue FMT H 504 |
Chain | Residue |
H | LYS47 |
H | GLU48 |
H | ARG114 |
H | HOH699 |
site_id | AE7 |
Number of Residues | 3 |
Details | binding site for residue FMT H 505 |
Chain | Residue |
H | ARG114 |
H | FMT507 |
H | HOH619 |
site_id | AE8 |
Number of Residues | 3 |
Details | binding site for residue FMT H 506 |
Chain | Residue |
D | ASN194 |
H | GLN80 |
H | SER84 |
site_id | AE9 |
Number of Residues | 2 |
Details | binding site for residue FMT H 507 |
Chain | Residue |
H | FMT505 |
H | HOH619 |
site_id | AF1 |
Number of Residues | 11 |
Details | binding site for residue HDJ H 508 |
Chain | Residue |
G | ASP64 |
G | MET67 |
G | TYR108 |
G | ASP136 |
H | LEU34 |
H | ILE184 |
H | PHE188 |
H | PHE202 |
H | PRO208 |
H | PHE211 |
H | HIS294 |
site_id | AF2 |
Number of Residues | 3 |
Details | binding site for residue ACT H 509 |
Chain | Residue |
G | GLN144 |
H | SER23 |
H | PHE297 |
site_id | AF3 |
Number of Residues | 3 |
Details | binding site for residue ACT H 510 |
Chain | Residue |
H | GLY20 |
H | GLY24 |
H | GLU332 |
site_id | AF4 |
Number of Residues | 3 |
Details | binding site for residue MLA H 511 |
Chain | Residue |
H | PRO262 |
H | GLY263 |
H | HOH665 |
site_id | AF5 |
Number of Residues | 6 |
Details | binding site for residue MLI E 301 |
Chain | Residue |
E | TYR181 |
E | GLY217 |
E | GLY219 |
E | ILE237 |
E | GLY239 |
E | SER240 |
site_id | AF6 |
Number of Residues | 19 |
Details | binding site for residue P1T F 501 |
Chain | Residue |
F | HIS100 |
F | LYS101 |
F | THR124 |
F | GLY125 |
F | ALA126 |
F | GLY127 |
F | GLN128 |
F | HIS129 |
F | THR204 |
F | CYS244 |
F | GLY246 |
F | GLY247 |
F | GLY248 |
F | SER249 |
F | ASN250 |
F | GLY317 |
F | GLU364 |
F | SER390 |
F | HOH609 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue CS F 502 |
Chain | Residue |
F | GLY246 |
F | ALA282 |
F | THR284 |
F | TYR320 |
F | GLY322 |
F | HOH613 |
site_id | AF8 |
Number of Residues | 1 |
Details | binding site for residue CS F 503 |
Chain | Residue |
F | LEU142 |
site_id | AF9 |
Number of Residues | 4 |
Details | binding site for residue CS F 504 |
Chain | Residue |
F | GLY67 |
F | PRO69 |
H | GLY67 |
H | PRO69 |
site_id | AG1 |
Number of Residues | 8 |
Details | binding site for residue FMT F 505 |
Chain | Residue |
D | GLY141 |
D | LEU142 |
D | ASP143 |
D | CS503 |
D | HOH608 |
F | GLY141 |
F | LEU142 |
F | ASP143 |
site_id | AG2 |
Number of Residues | 4 |
Details | binding site for residue FMT F 506 |
Chain | Residue |
F | LYS47 |
F | GLU48 |
F | ARG114 |
F | HOH692 |
site_id | AG3 |
Number of Residues | 1 |
Details | binding site for residue FMT F 507 |
Chain | Residue |
F | SER23 |
site_id | AG4 |
Number of Residues | 2 |
Details | binding site for residue FMT F 508 |
Chain | Residue |
F | LEU165 |
H | ARG355 |
site_id | AG5 |
Number of Residues | 5 |
Details | binding site for residue FMT F 509 |
Chain | Residue |
F | ASP274 |
F | ARG280 |
F | HIS312 |
F | SER313 |
F | ASP343 |
site_id | AG6 |
Number of Residues | 3 |
Details | binding site for residue FMT F 510 |
Chain | Residue |
F | GLY351 |
F | ARG355 |
H | LEU165 |
site_id | AG7 |
Number of Residues | 6 |
Details | binding site for residue FMT F 511 |
Chain | Residue |
F | THR97 |
F | GLN128 |
F | ARG162 |
F | ARG392 |
F | ASP394 |
F | LYS395 |
site_id | AG8 |
Number of Residues | 12 |
Details | binding site for residue HDJ F 513 |
Chain | Residue |
E | ASP64 |
E | TYR108 |
F | LEU34 |
F | ILE184 |
F | ASN185 |
F | PHE188 |
F | PHE202 |
F | PRO208 |
F | PHE211 |
F | PHE293 |
F | HIS294 |
F | GLY295 |
site_id | AG9 |
Number of Residues | 6 |
Details | binding site for residue EDO F 514 |
Chain | Residue |
B | ASP53 |
B | ASP56 |
B | ASP57 |
B | ARG60 |
F | GLN229 |
F | GLN233 |
site_id | AH1 |
Number of Residues | 6 |
Details | binding site for residue MLA F 515 |
Chain | Residue |
D | ARG236 |
F | SER79 |
F | GLN80 |
F | SER84 |
F | ARG381 |
F | HOH625 |
site_id | AH2 |
Number of Residues | 5 |
Details | binding site for residue MLI C 301 |
Chain | Residue |
C | TYR181 |
C | GLY217 |
C | GLY219 |
C | GLY239 |
C | SER240 |
site_id | AH3 |
Number of Residues | 2 |
Details | binding site for residue FMT C 302 |
Chain | Residue |
C | GLN144 |
D | SER23 |
site_id | AH4 |
Number of Residues | 20 |
Details | binding site for residue P1T D 501 |
Chain | Residue |
D | HIS100 |
D | LYS101 |
D | THR124 |
D | GLY125 |
D | ALA126 |
D | GLY127 |
D | GLN128 |
D | HIS129 |
D | THR204 |
D | CYS244 |
D | GLY246 |
D | GLY247 |
D | GLY248 |
D | SER249 |
D | ASN250 |
D | GLY317 |
D | LEU318 |
D | GLU364 |
D | SER390 |
D | HOH631 |
site_id | AH5 |
Number of Residues | 6 |
Details | binding site for residue CS D 502 |
Chain | Residue |
D | VAL245 |
D | GLY246 |
D | ALA282 |
D | THR284 |
D | TYR320 |
D | GLY322 |
site_id | AH6 |
Number of Residues | 4 |
Details | binding site for residue CS D 503 |
Chain | Residue |
D | GLY167 |
D | HOH609 |
F | FMT505 |
F | HOH718 |
site_id | AH7 |
Number of Residues | 2 |
Details | binding site for residue FMT D 504 |
Chain | Residue |
D | GLU48 |
D | ARG114 |
site_id | AH8 |
Number of Residues | 3 |
Details | binding site for residue FMT D 505 |
Chain | Residue |
D | HIS312 |
D | SER313 |
D | ASP319 |
site_id | AH9 |
Number of Residues | 2 |
Details | binding site for residue FMT D 506 |
Chain | Residue |
D | GLU40 |
D | ASP196 |
site_id | AI1 |
Number of Residues | 2 |
Details | binding site for residue FMT D 507 |
Chain | Residue |
B | LEU165 |
D | ARG355 |
site_id | AI2 |
Number of Residues | 3 |
Details | binding site for residue FMT D 508 |
Chain | Residue |
D | SER84 |
D | ARG381 |
F | ARG236 |
site_id | AI3 |
Number of Residues | 2 |
Details | binding site for residue FMT D 509 |
Chain | Residue |
D | GLU378 |
D | LEU379 |
site_id | AI4 |
Number of Residues | 1 |
Details | binding site for residue FMT D 510 |
Chain | Residue |
D | GLU39 |
site_id | AI5 |
Number of Residues | 13 |
Details | binding site for residue HDJ D 511 |
Chain | Residue |
C | ASP64 |
C | MET67 |
C | TYR108 |
C | ASP136 |
D | LEU34 |
D | ILE184 |
D | ASN185 |
D | PHE188 |
D | PHE202 |
D | PRO208 |
D | PHE211 |
D | HIS294 |
D | HOH709 |
site_id | AI6 |
Number of Residues | 5 |
Details | binding site for residue PGE D 512 |
Chain | Residue |
D | PRO262 |
D | GLY263 |
D | ARG265 |
D | GLY334 |
D | ARG335 |
Functional Information from PROSITE/UniProt
site_id | PS00167 |
Number of Residues | 14 |
Details | TRP_SYNTHASE_ALPHA Tryptophan synthase alpha chain signature. IEVGvPYSDPGMDG |
Chain | Residue | Details |
A | ILE56-GLY69 |
site_id | PS00168 |
Number of Residues | 15 |
Details | TRP_SYNTHASE_BETA Tryptophan synthase beta chain pyridoxal-phosphate attachment site. LnHtGSHKiNnvLgQ |
Chain | Residue | Details |
B | LEU94-GLN108 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_00133 |
Chain | Residue | Details |
B | HIS100 | |
H | HIS100 | |
F | HIS100 | |
D | HIS100 | |
E | GLU57 | |
E | ASP68 | |
C | GLU57 | |
C | ASP68 |