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6D8F

RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004520molecular_functionDNA endonuclease activity
A0044355biological_processclearance of foreign intracellular DNA
A0046872molecular_functionmetal ion binding
F0003676molecular_functionnucleic acid binding
F0003677molecular_functionDNA binding
F0003723molecular_functionRNA binding
F0004520molecular_functionDNA endonuclease activity
F0044355biological_processclearance of foreign intracellular DNA
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MPD A 801
ChainResidue
ATYR111
APHE152
AARG286

site_idAC2
Number of Residues4
Detailsbinding site for residue MPD A 802
ChainResidue
ALEU256
AGLY257
AHIS258
AASN259

site_idAC3
Number of Residues1
Detailsbinding site for residue ACT A 803
ChainResidue
AARG384

site_idAC4
Number of Residues4
Detailsbinding site for residue MG C 101
ChainResidue
AHOH1022
CU1
CA3
ALEU777

site_idAC5
Number of Residues4
Detailsbinding site for residue MPD F 801
ChainResidue
FLYS115
HG11
JDC-6
JDC-7

site_idAC6
Number of Residues3
Detailsbinding site for residue MPD F 802
ChainResidue
FGLU377
FSER381
FARG384

site_idAC7
Number of Residues6
Detailsbinding site for residue MG H 101
ChainResidue
FLEU777
FHOH953
HU1
HU2
HA3
HHOH204

site_idAC8
Number of Residues4
Detailsbinding site for residue MG J 101
ChainResidue
JDG-4
JHOH212
JHOH219
JHOH223

site_idAC9
Number of Residues4
Detailsbinding site for residue MPD J 102
ChainResidue
FTRP343
FGLN497
JDA6
JDC7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
ChainResidueDetails
ALEU777
FLEU777

219140

PDB entries from 2024-05-01

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