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6D8A

RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004520molecular_functionDNA endonuclease activity
A0044355biological_processclearance of foreign intracellular DNA
A0046872molecular_functionmetal ion binding
F0003676molecular_functionnucleic acid binding
F0003677molecular_functionDNA binding
F0003723molecular_functionRNA binding
F0004520molecular_functionDNA endonuclease activity
F0044355biological_processclearance of foreign intracellular DNA
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue MPD A 801
ChainResidue
APRO607
ALEU608
APHE634
AVAL635
ATHR636
ASER705
ALEU706
AHIS707
APRO708

site_idAC2
Number of Residues6
Detailsbinding site for residue MG C 101
ChainResidue
ALEU777
AHOH915
CU1
CU2
CA3
CHOH206

site_idAC3
Number of Residues4
Detailsbinding site for residue MPD G 101
ChainResidue
CA3
GDA0
GDG1
GDT4

site_idAC4
Number of Residues2
Detailsbinding site for residue MPD F 801
ChainResidue
FLYS115
HG11

site_idAC5
Number of Residues8
Detailsbinding site for residue MPD F 802
ChainResidue
FGLU28
FTYR159
FPRO161
FARG167
FARG309
FILE310
FVAL311
FHOH918

site_idAC6
Number of Residues4
Detailsbinding site for residue ACT F 803
ChainResidue
FMET528
FARG606
FPRO607
HG14

site_idAC7
Number of Residues6
Detailsbinding site for residue MG H 101
ChainResidue
FLEU777
FHOH950
HU1
HU2
HA3
HHOH207

site_idAC8
Number of Residues1
Detailsbinding site for residue MPD J 101
ChainResidue
JDG-14

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
ChainResidueDetails
ALEU777
FLEU777

218853

PDB entries from 2024-04-24

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