6D8A
RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand
エンティティ
| Entity ID | 鎖名 | 説明 | 種類 | 鎖長 | 化学式量 | 分子数 | データベース名(アクセス番号) | 由来する生物種 | エンティティの一般名 |
| 1 | A, D (A, F) | Uncharacterized protein | polymer | 791 | 89038.4 | 2 | UniProt (A4WYU7) | Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | |
| 2 | B, E (C, H) | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | polymer | 18 | 5772.5 | 2 | Rhodobacter sphaeroides ATCC 17025 | ||
| 3 | C, F (G, J) | DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*TP*GP*CP*AP*GP*AP*AP*TP*AP*AP*C)-3') | polymer | 26 | 7963.1 | 2 | Rhodobacter sphaeroides ATCC 17025 | ||
| 4 | G, I, J, K, N (A, G, F, J) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 5 | Chemie (MPD) PubChem (5288834) | |||
| 5 | H, M (C, H) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) PubChem (888) | |||
| 6 | L (F) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) PubChem (175) | |||
| 7 | O, P, Q, R, S... (A, C, G, F, H...) | water | water | 18.0 | 421 | Chemie (HOH) |
配列変更
A, F: 2 - 777 (UniProt: A4WYU7)
| PDB | 外部データベース | 詳細 |
|---|---|---|
| Met -13 | - | initiating methionine |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| Asp -6 | - | expression tag |
| Tyr -5 | - | expression tag |
| Lys -4 | - | expression tag |
| Asp -3 | - | expression tag |
| Asp -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Asp 0 | - | expression tag |
| Lys 1 | - | expression tag |
配列ビューア
非対称単位の内容
| タンパク質・ 核酸鎖 | 鎖の数 | 6 |
| 化学式量合計 | 205548.0 | |
| タンパク質・ 核酸・ 糖鎖以外* | 分子数 | 8 |
| 化学式量合計 | 698.5 | |
| 全て* | 化学式量合計 | 206246.5 |
