6D2P

Crystal structure of IOMA-class CLK31 Fab from an HIV-1 naive donor in complex with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.6 A

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Functional Information from GO Data

ChainGOidnamespacecontents
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Functional Information from PDB Data

site_idNumber of ResiduesDetails
AC15binding site for residue GOL C 201
ChainResidue
CHIS14
CSER16
CSER17
CASN65
CHOH308

AC22binding site for residue GOL C 202
ChainResidue
CASN18
CGLU96

AC37binding site for residue GOL C 203
ChainResidue
CSER137
CVAL145
CASN146
CALA159
CSER160
CTHR161
CHOH314

AC42binding site for residue GOL H 301
ChainResidue
HGLU10
HLYS19

AC57binding site for residue GOL H 302
ChainResidue
CASP82
CALA84
CLYS85
HTYR33
HSER99
HGLY101
HHOH429

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Functional Information from PDB atom coordinates for the "HETATM" binding sites

site_idNumber of ResiduesDetails
GOL_6d2p_C_2017GLYCEROL binding site
ChainResidueligand
CHIS14-SER17GOL: GLYCEROL
CVAL57GOL: GLYCEROL
CASN65GOL: GLYCEROL
CCYS151GOL: GLYCEROL

GOL_6d2p_C_2026GLYCEROL binding site
ChainResidueligand
CSER16-ASN18GOL: GLYCEROL
CASN65GOL: GLYCEROL
CSER94GOL: GLYCEROL
CGLU96GOL: GLYCEROL

GOL_6d2p_C_20312GLYCEROL binding site
ChainResidueligand
CPRO40GOL: GLYCEROL
CGLN61GOL: GLYCEROL
CPRO136-SER137GOL: GLYCEROL
CVAL145-HIS147GOL: GLYCEROL
CCYS158-THR161GOL: GLYCEROL
CPHE164GOL: GLYCEROL

GOL_6d2p_H_3028GLYCEROL binding site
ChainResidueligand
CARG46GOL: GLYCEROL
CASP82GOL: GLYCEROL
CALA84-LYS85GOL: GLYCEROL
HTYR33GOL: GLYCEROL
HSER99GOL: GLYCEROL
HGLY101-ARG102GOL: GLYCEROL

GOL_6d2p_H_3015GLYCEROL binding site
ChainResidueligand
HGLU10GOL: GLYCEROL
HLYS12GOL: GLYCEROL
HSER17-LYS19GOL: GLYCEROL

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Functional Information from PROSITE/UniProt

site_idNumber of ResiduesDetails
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Functional Information from SwissProt/UniProt

site_idNumber of ResiduesDetails
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Catalytic Information from CSA

site_idNumber of ResiduesDetails